Jatropha Genome Database

JcCB0125761.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0125761.10 + phase: 0 /partial
         (627 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11656                                                            311   1e-84
KJC_c05944                                                            143   6e-34

>KJC_c11656 
          Length = 716

 Score =  311 bits (157), Expect = 1e-84
 Identities = 211/229 (92%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaatatctttgtcaatggtataaatctaaatttgtcctccaaaccagcttcagctgacca 62
           |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 232 gaatatctttttgaatggtataaatgtaaatttgtcctccaaaccagcttcagctgacca 173

                                                                       
Query: 63  gttggtggcagggagcatcatattagcatcattgtgtgcagcactagaccgcattgagtt 122
           |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 172 gttggtggcagggagcatcatattggcatcagtgtgtgcagcagtagaccgcattgagtt 113

                                                                       
Query: 123 tatttgtgaggcttcatacaaccttttgtggattcaaaaatatgatattgatattttatt 182
            |||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||
Sbjct: 112 catttgtgaggcttcatacaatcttctgaggattcaaaagtatgatattgatattttatt 53

                                                            
Query: 183 agctgcactgcatgtttttgcttaccttgggggcgataaatttttctct 231
           |||    |||||||||||||||||||||||||| || | ||||||||||
Sbjct: 52  agccatcctgcatgtttttgcttaccttgggggtgacagatttttctct 4


>KJC_c05944 
          Length = 679

 Score =  143 bits (72), Expect = 6e-34
 Identities = 139/161 (86%), Gaps = 3/161 (1%)
 Strand = Plus / Minus

                                                                       
Query: 271 ataataatttttcttgaaggc---cattcagcagttgcttcagcttcttcttgtttctca 327
           ||||||||||||||||||||    |||||| |||||||||||||| ||||| ||||||||
Sbjct: 669 ataataatttttcttgaaggaggacattcaccagttgcttcagctgcttctcgtttctca 610

                                                                       
Query: 328 tctgtgcatgtggttggaatgaagttccatccatgtggcaaatgcccattcgatgcagtt 387
            || ||||||||| |||| | ||||||||| ||||||| ||||| || || | |||||||
Sbjct: 609 nctttgcatgtggctggagttaagttccattcatgtggtaaatgtccgtttggtgcagtt 550

                                                    
Query: 388 tcagtggatatggttgtatcagagctcttggaaaagtttca 428
           ||||||||||| |||||  ||||||||||||||||| ||||
Sbjct: 549 tcagtggatattgttgtgacagagctcttggaaaagcttca 509



 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                       
Query: 502 tgggagtggacttgtggcaaaattatctctggactgccgaaaattttgggaagacctatg 561
           |||||||||||||| || ||||||||| ||| | ||  | | || ||||| ||||| |||
Sbjct: 276 tgggagtggacttgcgggaaaattatccctgcattgttggatatcttggggagacccatg 217

                                                              
Query: 562 ccagatgactttgttgttgctgttgttgttctcataggtcaggttgggagg 612
           | |||||| |||  ||| |||||||||||||||||||||||| ||||||||
Sbjct: 216 ctagatgatttttctgtagctgttgttgttctcataggtcagcttgggagg 166