Jatropha Genome Database

JcCB0125201.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0125201.10 + phase: 1 /pseudo/partial
         (1706 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01986                                                            165   4e-40

>KJC_c01986 
          Length = 1295

 Score =  165 bits (83), Expect = 4e-40
 Identities = 311/387 (80%)
 Strand = Plus / Plus

                                                                        
Query: 803  tcaccatgaatttcatttcactgtgcaggatgggattgatgccattgaagatgtgatata 862
            |||||| ||||| || || ||||| ||||| || ||||||||  |||| || || || ||
Sbjct: 764  tcaccacgaattgcactttactgttcaggaaggaattgatgctcttgaggaagtcattta 823

                                                                        
Query: 863  ccatattgaaacgtatgatgttacaactattagagcaagcacccctatgttcctaatgtc 922
             ||||||||||| |||||||| || ||||||||||| ||||| || ||||| || |||||
Sbjct: 824  tcatattgaaacatatgatgtgacgactattagagccagcactccaatgtttcttatgtc 883

                                                                        
Query: 923  acgcaaaatcaaggcacttggagtcaagatggtcctttctggtgaaggctctgatgaggt 982
             || ||||||||  || | ||||| || |||||  ||||||| ||||| || |||||| |
Sbjct: 884  gcgaaaaatcaaatcattaggagttaaaatggttatttctggggaaggttcagatgagat 943

                                                                        
Query: 983  atttggtgggtatttatatttccacaaggcacctaataaggaagagttccaccgcgaaac 1042
            ||| || || ||||||||||| ||||||||||| || ||||||||||| ||||  || ||
Sbjct: 944  attcggaggttatttatattttcacaaggcaccgaacaaggaagagtttcaccaagagac 1003

                                                                        
Query: 1043 atgtcggaagataaaggcccttcaccagtatgactgcttaagagccaataaagcaacatc 1102
            |||||| ||||| ||||| ||||| |  ||||||||||| || ||||||||| | || ||
Sbjct: 1004 atgtcgaaagatcaaggctcttcatctttatgactgcttgagggccaataaatcgacttc 1063

                                                                        
Query: 1103 tgcttggggtttggaagctcgagtccctttcttagataaagaatttattaatgttgctat 1162
             || |||||  | || ||||| || || || ||||| ||||| || || |||||||| ||
Sbjct: 1064 agcatggggccttgaggctcgtgtaccctttttagacaaagacttcatcaatgttgcaat 1123

                                       
Query: 1163 ggctattgatcctgagtggaaaatgat 1189
            |   || ||||||||||||||||||||
Sbjct: 1124 gagcatagatcctgagtggaaaatgat 1150



 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                       
Query: 214 agtttcgaacaggcagtgattgtgatgttattgctcatctgtatgaagaatatggagaaa 273
           |||| ||||| || ||||| ||||| || ||||| ||||| || ||||||||||||||||
Sbjct: 179 agttccgaactggtagtgactgtgaagtgattgcccatctttacgaagaatatggagaaa 238

                                       
Query: 274 attttgtggatatgttggatggaatgtt 301
            ||||||  | ||||||||||| |||||
Sbjct: 239 gttttgtcaacatgttggatgggatgtt 266