Jatropha Genome Database
- JcCB0124301.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0124301.10 + phase: 0 /partial
(450 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c06446 168 7e-42
KJC_c03168 135 1e-31
KJC_c03906 113 4e-25
KJC_c02448 107 2e-23
KJC_c12118 94 3e-19
KJC_c10306 90 5e-18
KJC_c05837 78 2e-14
>KJC_c06446
Length = 815
Score = 168 bits (85), Expect = 7e-42
Identities = 167/193 (86%), Gaps = 1/193 (0%)
Strand = Plus / Minus
Query: 240 ttgtgtccatcaccatccctctagggctcttggagatttaactggcattaaaaagcactt 299
|||||||||||| | || || |||||||||||||| ||||| || || || ||||||||
Sbjct: 371 ttgtgtccatcatgacccatcaagggctcttggagacttaacaggaatcaagaagcactt 312
Query: 300 ttgcagaaagcacggtgagaagaagtgg-aagtgtgagaagtgttcaaagagatacgctg 358
|||||||||||| ||||||||||||||| || ||||| ||||| |||||||| || || |
Sbjct: 311 ttgcagaaagcatggtgagaagaagtgggaaatgtgataagtgctcaaagaggtatgcgg 252
Query: 359 ttcagtctgattggaaagcacactccaaaacctgtggtactagagagtataaatgtgact 418
|||| || ||||||||||| ||||||||||| ||||| |||||||| || | ||||||||
Sbjct: 251 ttcaatcagattggaaagctcactccaaaacatgtggcactagagaatacagatgtgact 192
Query: 419 gtggaactctttt 431
|||||||||||||
Sbjct: 191 gtggaactctttt 179
>KJC_c03168
Length = 846
Score = 135 bits (68), Expect = 1e-31
Identities = 164/196 (83%)
Strand = Plus / Plus
Query: 239 cttgtgtccatcaccatccctctagggctcttggagatttaactggcattaaaaagcact 298
||||||| |||||| |||| ||||| ||| | || ||| | || || || || ||||| |
Sbjct: 78 cttgtgttcatcacgatccatctagagctttaggcgatcttacagggataaagaagcatt 137
Query: 299 tttgcagaaagcacggtgagaagaagtggaagtgtgagaagtgttcaaagagatacgctg 358
||||||| || ||||| |||||||||||||| || || |||||||| |||| ||| || |
Sbjct: 138 tttgcaggaaacacggcgagaagaagtggaaatgcgataagtgttcgaagaaatatgcag 197
Query: 359 ttcagtctgattggaaagcacactccaaaacctgtggtactagagagtataaatgtgact 418
||||||||||||||||||| |||||||||| ||||| ||||| || |||||||| || |
Sbjct: 198 ttcagtctgattggaaagctcactccaaaatttgtggcactagggaatataaatgcgatt 257
Query: 419 gtggaactcttttttc 434
||||||||||||||||
Sbjct: 258 gtggaactcttttttc 273
>KJC_c03906
Length = 556
Score = 113 bits (57), Expect = 4e-25
Identities = 99/113 (87%)
Strand = Plus / Minus
Query: 319 aagaagtggaagtgtgagaagtgttcaaagagatacgctgttcagtctgattggaaagca 378
||||| ||||| ||||| || |||||||||| ||||||||||| ||||||||||||||
Sbjct: 332 aagaaatggaaatgtgaaaaatgttcaaagatctacgctgttcaatctgattggaaagct 273
Query: 379 cactccaaaacctgtggtactagagagtataaatgtgactgtggaactctttt 431
|| || ||||| ||||| ||||||||||||| ||||||||||||||| |||||
Sbjct: 272 cattctaaaacttgtggaactagagagtatagatgtgactgtggaaccctttt 220
>KJC_c02448
Length = 719
Score = 107 bits (54), Expect = 2e-23
Identities = 285/362 (78%)
Strand = Plus / Minus
Query: 70 ccaaaaactctaatggctacaaacagattcttatgtgaaatatgtggaaaagggtttcaa 129
|||||||| ||| | || ||||||||||| ||||||| || ||| ||||| ||||||
Sbjct: 711 ccaaaaacactattagcaacaaacagatttatatgtgagatctgtaacaaaggatttcaa 652
Query: 130 agagatcaaaatctgcagcttcatcgacggggtcataacctgccatggaagctaaagcaa 189
|||||||||||||| || |||||| || | ||||||||||||||||||||| ||||||||
Sbjct: 651 agagatcaaaatcttcaacttcatagaagaggtcataacctgccatggaagttaaagcaa 592
Query: 190 aggactactaaagaagcaagaaagcgcgtatacgtctgccctgaaaagtcttgtgtccat 249
|| || | || |||| || ||| ||||| || || || ||| | ||||| |||
Sbjct: 591 agaacaaacaaggaagtgaggaagaaggtatatgtatgtccagaagctacatgtgtacat 532
Query: 250 caccatccctctagggctcttggagatttaactggcattaaaaagcacttttgcagaaag 309
|| | || || || ||||| ||||| | || || || ||||| ||||| ||||||||
Sbjct: 531 catgacccatcaagagctctaggagaccttacaggaatcaaaaacaactttagcagaaag 472
Query: 310 cacggtgagaagaagtggaagtgtgagaagtgttcaaagagatacgctgttcagtctgat 369
|| ||||||||||||||||||||||| ||||| || || | || || ||||| |||||
Sbjct: 471 catggtgagaagaagtggaagtgtgaaaagtgctctaaacgttatgccgttcaatctgac 412
Query: 370 tggaaagcacactccaaaacctgtggtactagagagtataaatgtgactgtggaactctt 429
|||||||| || ||||| | ||||| || |||||||||| |||||| || ||||| |||
Sbjct: 411 tggaaagcccattccaagatttgtggcacaagagagtatagatgtgattgcggaaccctt 352
Query: 430 tt 431
||
Sbjct: 351 tt 350
>KJC_c12118
Length = 661
Score = 93.7 bits (47), Expect = 3e-19
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 325 tggaagtgtgagaagtgttcaaagagatacgctgttcagtctgattggaaagcacactcc 384
|||||||||||||| |||||||||||||| ||||| || |||||||||||||| || ||
Sbjct: 103 tggaagtgtgagaaatgttcaaagagatatgctgtgcaatctgattggaaagcccattct 44
Query: 385 aaaacctgtggtactagagagtataaatgtgactgtggaactc 427
|| || ||||| || ||||| |||| |||||||||||| ||||
Sbjct: 43 aagacttgtggcaccagagaatatagatgtgactgtggcactc 1
>KJC_c10306
Length = 589
Score = 89.7 bits (45), Expect = 5e-18
Identities = 159/197 (80%)
Strand = Plus / Minus
Query: 9 aaagaagaaaagaaatcttccaggaacaccagatcctgaagcagaagttatagctttatc 68
|||||| || ||||||| || ||||||||| |||| || |||||||| ||||| ||||
Sbjct: 237 aaagaaaaagagaaatcagcctggaacaccaaatccagatgcagaagtgatagcactatc 178
Query: 69 accaaaaactctaatggctacaaacagattcttatgtgaaatatgtggaaaagggtttca 128
|| || || || ||||| |||||||| ||| |||||||| |||| ||||| |||||
Sbjct: 177 tcccaagacactgatggcaacaaacaggttcatatgtgaagtatgcaacaaaggttttca 118
Query: 129 aagagatcaaaatctgcagcttcatcgacggggtcataacctgccatggaagctaaagca 188
|||||| ||||| || ||||| || || | || || ||||| |||||||||||||||||
Sbjct: 117 aagagagcaaaacctacagctccacagaagaggacacaacctcccatggaagctaaagca 58
Query: 189 aaggactactaaagaag 205
|| |||||| |||||||
Sbjct: 57 aaagactacaaaagaag 41
>KJC_c05837
Length = 885
Score = 77.8 bits (39), Expect = 2e-14
Identities = 96/115 (83%)
Strand = Plus / Minus
Query: 299 tttgcagaaagcacggtgagaagaagtggaagtgtgagaagtgttcaaagagatacgctg 358
||||||| |||||||| ||||||||||||||||||||| ||| || |||| ||| || |
Sbjct: 589 tttgcaggaagcacggggagaagaagtggaagtgtgagcggtgctcgaagaaatatgcag 530
Query: 359 ttcagtctgattggaaagcacactccaaaacctgtggtactagagagtataaatg 413
| || || |||||||| || ||| ||||| ||||| |||||||||||||||||
Sbjct: 529 tacaatccgattggaaggcccacatgaaaacttgtggaactagagagtataaatg 475
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 9 aaagaagaaaagaaatcttccaggaacaccagatcctgaagcagaagttatagctttatc 68
||||||||| |||||||| || |||| |||||||| || || ||||| |||||||||||
Sbjct: 877 aaagaagaagagaaatctccctggaatgccagatccagatgctgaagtgatagctttatc 818
Query: 69 accaaaaactcta 81
||||| ||||||
Sbjct: 817 gccaaagactcta 805