Jatropha Genome Database

JcCB0123131.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0123131.20 + phase: 0 
         (1572 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08119                                                            983   0.0  

>KJC_c08119 
          Length = 507

 Score =  983 bits (496), Expect = 0.0
 Identities = 505/507 (99%), Gaps = 1/507 (0%)
 Strand = Plus / Minus

                                                                        
Query: 952  gtcaaaggcagtatct-atgttttacgaatgccagtgattgctttgcttatggacaagag 1010
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 507  gtcaaaggcagtatcttangttttacgaatgccagtgattgctttgcttatggacaagag 448

                                                                        
Query: 1011 tagcggcgggtacaaaggtataagattggcttctggtcaggacatatttagccagaagct 1070
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447  tagcggcgggtacaaaggtataagattggcttctggtcaggacatatttagccagaagct 388

                                                                        
Query: 1071 cgtcctggacccatccttgacagttccatcaccctcagcttctccattggattctccgca 1130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387  cgtcctggacccatccttgacagttccatcaccctcagcttctccattggattctccgca 328

                                                                        
Query: 1131 tgaaaattttcaatttttatgtgtgagagatgttaaacagaaggtggctagaggaatatg 1190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327  tgaaaattttcaatttttatgtgtgagagatgttaaacagaaggtggctagaggaatatg 268

                                                                        
Query: 1191 cattataaggagttccttgaagccagatatagcaaattttcttgttgtatatcctcctcg 1250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267  cattataaggagttccttgaagccagatatagcaaattttcttgttgtatatcctcctcg 208

                                                                        
Query: 1251 atccttgtaccctgagcagatgacatcaattcgagccctccagataggtggcagtttggc 1310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207  atccttgtaccctgagcagatgacatcaattcgagccctccagataggtggcagtttggc 148

                                                                        
Query: 1311 ggtttgtcctccagatacgtttgtactgtatctttcagctttgtgtgatgatgtccatca 1370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147  ggtttgtcctccagatacgtttgtactgtatctttcagctttgtgtgatgatgtccatca 88

                                                                        
Query: 1371 ggggaagaagctattaaatgcagccatgaatgcacttctcacttgtcctgattctggaca 1430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87   ggggaagaagctattaaatgcagccatgaatgcacttctcacttgtcctgattctggaca 28

                                       
Query: 1431 acctgaaactagttccctagatcaaac 1457
            |||||||||||||||||||||||||||
Sbjct: 27   acctgaaactagttccctagatcaaac 1