Jatropha Genome Database

JcCB0123131.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0123131.10 + phase: 0 /partial
         (591 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04312                                                            549   e-156
KJC_c03034                                                             50   6e-06

>KJC_c04312 
          Length = 688

 Score =  549 bits (277), Expect = e-156
 Identities = 284/285 (99%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gcactgacattgactatcttcaaattctttgctggactggatattgttgatgtgctgctg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gcactgacattgac-atcttcaaattctttgctggactggatattgttgatgtgctgctg 459

                                                                       
Query: 64  gtcaataagaatggacgtttcacaggagaggctttcgtcgtctttgcagggtctatgcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtcaataagaatggacgtttcacaggagaggctttcgtcgtctttgcagggtctatgcag 519

                                                                       
Query: 124 gttgagtttgctttacagagagatcgacagaacatgggccgtagatatgtggaagttttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gttgagtttgctttacagagagatcgacagaacatgggccgtagatatgtggaagttttt 579

                                                                       
Query: 184 aggtgcaagaggcaggattattacaatgctgttgcagcagaggtgaattatgaaggaatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aggtgcaagaggcaggattattacaatgctgttgcagcagaggtgaattatgaaggaatc 639

                                                        
Query: 244 tatgacactgattatcatggaagtccaccaccatctaaagcaaag 288
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tatgacactgattatcatggaagtccaccaccatctaaagcaaag 684


>KJC_c03034 
          Length = 810

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 149 gacagaacatgggccgtagatatgtggaagtttttaggtgcaagaggcaggattattaca 208
           |||||||||||||| |  ||||||| || ||||| ||  | |||||||||||||||||||
Sbjct: 256 gacagaacatgggcagacgatatgttgaggttttcagaagtaagaggcaggattattaca 315

            
Query: 209 a 209
           |
Sbjct: 316 a 316