Jatropha Genome Database

JcCB0122531.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0122531.20 - phase: 1 /partial
         (410 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08253                                                            571   e-163

>KJC_c08253 
          Length = 367

 Score =  571 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccccagagttcatacggtgtagtgagtgcatcttcacctccacttgcagctccatctt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agcccaagagttcatacggtgtagtgagtgcatcttcacctccacttgcagctccatctt 233

                                                                       
Query: 61  ccctcggtctattttctggttggggttcaggaacgttaggctcttcggcacatgtggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ccctcggtctattttctggttggggttcaggaacgttaggctcttcggcacatgtggatt 173

                                                                       
Query: 121 ggaatacaggagtgatgccagagtttgactataacagtatagattggactttggataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ggaatacaggagtgatgccagagtttgactataacagtatagattggactttggataata 113

                                                                       
Query: 181 atatgttatcatccaaaccaagcgggttgtggctggggctttcctcattattgaggaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 atatgttatcatccaaaccaagcgggttgtggctggggctttcctcattattgaggaaca 53

                                                               
Query: 241 gttccggcacaagaatgaacagtatgaatagttcctgcatatcagggttacg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  gttccggcacaagaatgaacagtatgaatagttcctgcatatcagggttacg 1