Jatropha Genome Database

JcCB0121101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0121101.10 + phase: 0 /partial
         (1135 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02614                                                            192   1e-48

>KJC_c02614 
          Length = 548

 Score =  192 bits (97), Expect = 1e-48
 Identities = 322/397 (81%)
 Strand = Plus / Minus

                                                                        
Query: 707  tagctggaggcaaatacttcaacaaggatgtggttgctgctgtaatcttaggtactggga 766
            |||||||||| | ||||| | || |||||||  |||||||||||||||| || ||||| |
Sbjct: 542  tagctggaggtagatactacgaccaggatgttattgctgctgtaatcttggggactggaa 483

                                                                        
Query: 767  caaatgctgcttatgtggaacgtgcacaagcaataccaaaatggcacggtgctcttcctg 826
            |||||||||| ||||| ||||| ||||||||||| || || ||||| |||  ||| ||  
Sbjct: 482  caaatgctgcatatgtagaacgagcacaagcaattcccaagtggcatggtcttctaccaa 423

                                                                        
Query: 827  aatctggcgagatggttatcaacatggagtggggtaactttaggtcatcgcatcttccac 886
            || |||| || |||||||||||||||||||||||||||||| |||| ||||| || ||| 
Sbjct: 422  aaactggagaaatggttatcaacatggagtggggtaactttcggtcgtcgcacctaccat 363

                                                                        
Query: 887  tgactaagtatgaccttgcactggatgctgaaagtttaaatcctggagaacagatctttg 946
            |||| || ||||| |  || |||||||  ||   | | ||||| || |||||||| ||||
Sbjct: 362  tgacaaaatatgatcaagccctggatgacgactctctgaatccaggggaacagatttttg 303

                                                                        
Query: 947  aaaagataatttctggtatgtacttgggagaaattgtaagaagagttctacttaggatgg 1006
            ||||||  |||||||||||||| ||||||||||| ||| | ||||| ||| |    ||||
Sbjct: 302  aaaagactatttctggtatgtatttgggagaaatagtacgcagagtcctagtggaaatgg 243

                                                                        
Query: 1007 ctgaagaagcttcattttttggtgatgctgttccaccaaaacttagggttcccttcattt 1066
            |||| |||||| | || |||||||||| ||||||| ||||||| | | |||| || ||||
Sbjct: 242  ctgaggaagctgctttctttggtgatgttgttccatcaaaactgaagattccatttattt 183

                                                 
Query: 1067 tgagaacacctgatatgtcagcaatgcatcatgatac 1103
            | || || || || ||||| |||||||||||||||||
Sbjct: 182  taaggactccagacatgtctgcaatgcatcatgatac 146