Jatropha Genome Database

JcCB0119431.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0119431.20 + phase: 2 /pseudo/partial
         (605 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06141                                                             56   1e-07

>KJC_c06141 
          Length = 525

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 346 tttcttaggaaccaaacatgcagctcgagtgatgattcctgctctacaagggagtataat 405
           |||||||||||| |||||||||||||| || ||||| |||  || | |||| ||||||||
Sbjct: 493 tttcttaggaactaaacatgcagctcgtgtaatgatccctaatcgaaaaggaagtataat 434

               
Query: 406 taca 409
           ||||
Sbjct: 433 taca 430