Jatropha Genome Database

JcCB0119211.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0119211.20 + phase: 0 
         (1518 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04580                                                             84   1e-15
KJC_c09795                                                             60   2e-08

>KJC_c04580 
          Length = 623

 Score = 83.8 bits (42), Expect = 1e-15
 Identities = 139/170 (81%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                       
Query: 287 gttgtagtagacctcgcttggctggtactggaagactatcttacaactatcttgatatag 346
           |||| ||||||||||  || |||||| ||| |||||| || ||||| ||| | ||| |||
Sbjct: 398 gttgcagtagacctccattagctggtgctgcaagactttcatacaattatttagatgtag 457

                                                                       
Query: 347 cttttacaccttatggagattactggagagaaataaaaaagatttgtgttcttgag-ctt 405
           ||||| |||| ||||| |||||||||||||| || |  |  || |||||||||||| |||
Sbjct: 458 ctttttcaccatatggtgattactggagagagattaggagaatatgtgttcttgagtctt 517

                                                             
Query: 406 tttagtgctaaaagagttcaatcgtttcaatccgttagagaagaagaagt 455
           |||||  | ||||| || || |||||||| | ||||||||||||||||||
Sbjct: 518 tttagcacgaaaagggtgcagtcgtttcagttcgttagagaagaagaagt 567


>KJC_c09795 
          Length = 468

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 99/122 (81%)
 Strand = Plus / Minus

                                                                        
Query: 1189 aatgtatgggcaattggaagagatccaaaaacttggaaaaatcctgaagaattctttcca 1248
            ||||| |||||||| ||| ||||||| ||    ||||| || || ||||||||||| || 
Sbjct: 338  aatgtttgggcaatcggacgagatcccaactactggaagaacccagaagaattcttccct 279

                                                                        
Query: 1249 gagagatttattgataactccattgattttagagggcaaaattatgaatttttaccattt 1308
            || |||||| | |||| |||||||||||||| ||| ||||||| ||| ||| | ||||||
Sbjct: 278  gaaagatttgtggatagctccattgattttaaaggacaaaattttgagtttctgccattt 219

              
Query: 1309 gg 1310
            ||
Sbjct: 218  gg 217