Jatropha Genome Database

JcCB0117661.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0117661.10 + phase: 2 /partial
         (985 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06881                                                            214   3e-55
KJC_c12155                                                            100   1e-20

>KJC_c06881 
          Length = 397

 Score =  214 bits (108), Expect = 3e-55
 Identities = 258/308 (83%)
 Strand = Plus / Plus

                                                                       
Query: 453 atattatagttgcaaattgtggtgattctagagcagtcctgtgtcgcggaaaagtggcaa 512
           |||| ||||||||||| ||||||||||| |||||||| || | ||| ||||||| | |||
Sbjct: 34  atatcatagttgcaaactgtggtgattcaagagcagtgctttatcgtggaaaagagtcaa 93

                                                                       
Query: 513 tgccgttgtcagtagatcacaaaccagatagagaagacgaatatacaaggatagaggcag 572
           || | |||||| | ||||| |||||| | |||||||| || ||| | ||||| |||||| 
Sbjct: 94  tggcattgtcaattgatcataaaccaaacagagaagatgagtatgccaggattgaggcat 153

                                                                       
Query: 573 caggaggcaaaatcatacaatggaacggatctcgtgtttttggtgtccttgcaatgtcaa 632
           | ||||||||  ||||||| ||||| |||   |||||||||||||| ||||| ||||| |
Sbjct: 154 ctggaggcaaggtcatacagtggaatggacaccgtgtttttggtgttcttgccatgtcta 213

                                                                       
Query: 633 gatccataggtgacagatatttgaaaccatggatagtcccagatccagaagtgatgtttg 692
           ||||||| ||||| ||||||||||||||||||||  | ||||| |||||||| |||||||
Sbjct: 214 gatccattggtgatagatatttgaaaccatggattattccagaaccagaagttatgtttg 273

                                                                       
Query: 693 ttcctcgagaaaaagacgatgaatgcctcatcttagcgagtgatggtttgtgggatgtga 752
           |||||||||  | ||| ||||||||||| || ||||| ||||||||  |||||||||| |
Sbjct: 274 ttcctcgagctagagaagatgaatgccttattttagccagtgatgggctgtgggatgtca 333

                   
Query: 753 tgacaaat 760
           ||||||||
Sbjct: 334 tgacaaat 341


>KJC_c12155 
          Length = 737

 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 104/122 (85%)
 Strand = Plus / Minus

                                                                       
Query: 518 ttgtcagtagatcacaaaccagatagagaagacgaatatacaaggatagaggcagcagga 577
           ||||| || ||||| |||||| || ||||||| |||||| | |||||||||||||| |||
Sbjct: 419 ttgtctgtggatcataaaccaaatcgagaagatgaatatgcgaggatagaggcagctgga 360

                                                                       
Query: 578 ggcaaaatcatacaatggaacggatctcgtgtttttggtgtccttgcaatgtcaagatcc 637
           |||||| | ||||||||||| ||   |||||| ||||| || ||||||||||||||||||
Sbjct: 359 ggcaaagttatacaatggaatgggcatcgtgtctttggcgttcttgcaatgtcaagatcc 300

             
Query: 638 at 639
           ||
Sbjct: 299 at 298