Jatropha Genome Database

JcCB0114351.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0114351.10 + phase: 0 /pseudo
         (1212 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05224                                                            385   e-106

>KJC_c05224 
          Length = 528

 Score =  385 bits (194), Expect = e-106
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                        
Query: 994  aacttgggattggagaaagtgggggtaaaaatgaccaagaatggagcaatagaggttgat 1053
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194  aacttgggattggagaaagtgggggtaaaaatgaccaagaatggagcaatagaggttgat 135

                                                                        
Query: 1054 gaatactcatgcacatcagttccttccatttgggcagttggagatgttacagatagagtg 1113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134  gaatactcatgcacatcagttccttccatttgggcagttggagatgttacagatagagtg 75

                                                                        
Query: 1114 aatttgactccagttgctttgatggaaggaggagcattggcaaaaactctgtttctgaat 1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74   aatttgactccagttgctttgatggaaggaggagcattggcaaaaactctgtttctgaat 15

                          
Query: 1174 gagccaacaaaacc 1187
            ||||||||||||||
Sbjct: 14   gagccaacaaaacc 1



 Score =  272 bits (137), Expect = 2e-72
 Identities = 154/157 (98%), Gaps = 2/157 (1%)
 Strand = Plus / Minus

                                                                       
Query: 722 atgctgcacttgatttgccctcaaagcctgagaaaattgcaatagttggtggaggttaca 781
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 524 atgctgcacttgatttgcc-tcaaagcctgagaaaatagcaatagttggtggaggttaca 466

                                                                       
Query: 782 ttgccttggagttcgctggtatattcaatggtttgaaaagtgacgtccatgtatttatac 841
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttgccttggagttcgctggtatattcaatggtttgaaaagtgacgtccatgtatttatac 406

                                                
Query: 842 ggcagaaaaaagtattaaggggatttgatgaagaggt 878
           |||||| ||||||||||||||||||||||||||||||
Sbjct: 405 ggcaga-aaaagtattaaggggatttgatgaagaggt 370



 Score = 54.0 bits (27), Expect = 8e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 967 aggtcagagattttgttgcacaagaaa 993
           |||||||||||||||||||||||||||
Sbjct: 373 aggtcagagattttgttgcacaagaaa 347