Jatropha Genome Database

JcCB0111501.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0111501.20 + phase: 0 /pseudo
         (453 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00851                                                            874   0.0  

>KJC_c00851 
          Length = 3075

 Score =  874 bits (441), Expect = 0.0
 Identities = 448/449 (99%), Gaps = 1/449 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggctcagcctctcataaagaaagacgacgaccgcgacgacgaagcggagttctctcca 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3010 atggctcagcctctcataaagaaagacgacgaccgcgacgacgaagcggagttctctcca 2951

                                                                        
Query: 61   tttcttggtattgagaagggtgcagttcttcaggaagccagggttttcaatgaccctcag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2950 tttcttggtattgagaagggtgcagttcttcaggaagccagggttttcaatgaccctcag 2891

                                                                        
Query: 121  cttgatccaagaaaatgctctcaggtcattacaaagcttctatatcttctgaaccaagga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2890 cttgatccaagaaaatgctctcaggtcattacaaagcttctatatcttctgaaccaagga 2831

                                                                        
Query: 181  gaaacattcactaaggttgaagccacagaagttttctttgctgtgacaaagctttttcag 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2830 gaaacattcactaaggttgaagccacagaagttttctttgctgtgacaaagctttttcag 2771

                                                                        
Query: 241  tccagggatataggtttaaggagaatggtctatttgatgataaaggaattatccccatca 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2770 tccagggatataggtttaaggagaatggtctatttgatgataaaggaattatccccatca 2711

                                                                        
Query: 301  gcagatgaggttataattgtgacaagctcccttatgaaggacatgaatagcaagagtgat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2710 gcagatgaggttataattgtgacaagctcccttatgaaggacatgaatagcaagagtgat 2651

                                                                        
Query: 361  atgtaccgtgcaaatgctattcgtgtgctttgtcggataacagatggaaccctgctcacc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2650 atgtaccgtgcaaatgctattcgtgtgctttgtcggataacagatggaaccctgctcacc 2591

                                         
Query: 421  caaattgagcgatac-tgaaacaagcaat 448
            ||||||||||||||| |||||||||||||
Sbjct: 2590 caaattgagcgatacttgaaacaagcaat 2562