Jatropha Genome Database
- JcCB0110871.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0110871.10 + phase: 0 /partial
(945 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c10498 474 e-133
KJC_c06451 442 e-124
KJC_c09066 62 3e-09
>KJC_c10498
Length = 491
Score = 474 bits (239), Expect = e-133
Identities = 262/266 (98%), Gaps = 4/266 (1%)
Strand = Plus / Minus
Query: 555 tatgggaaatacttgctttatgaacagtgctcttcagtgcttggttcacactcccccact 614
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 491 tatgggaaatacttgctttatgaacagtgctcttcagtgcttggttcaca-tcccccact 433
Query: 615 tgctgagtatttcttgcaagattactctgaggagatcaacactgaaaatcctttaggaat 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgctgagtatttcttgcaagattactctgaggagatcaacactgaaaatcctttaggaat 373
Query: 675 gcatggtgaacttgcacttgcatttggtgatttgttgaggaaactgtggtcctcagggag 734
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 372 gcatggtgaacttgcacttgcatttggtgatttgttgagg-aactgtggtcctcagggag 314
Query: 735 atctacaattgcaccacgtgcatttaaggggaaacttgctctttttgctccacaattcag 794
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 313 atctacaattgcaccacgtgcattta--gggaaacttgctctttttgctccacaattcag 256
Query: 795 tggttataatcagcacgattctcaag 820
||||||||||||||||||||||||||
Sbjct: 255 tggttataatcagcacgattctcaag 230
>KJC_c06451
Length = 692
Score = 442 bits (223), Expect = e-124
Identities = 258/268 (96%), Gaps = 5/268 (1%)
Strand = Plus / Minus
Query: 1 agaaagatgatttcacagggtgcttttacnnnnnnncagttcaacgtggaggtttttcca 60
|||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct: 266 agaaagatgatttcacagggtgctttta---aaaaacagttcaacgtg-aggtttt-cca 212
Query: 61 ctcagtcttaaagtaattgattccagggatgactgtgaattcactatcaggttaagcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ctcagtcttaaagtaattgattccagggatgactgtgaattcactatcaggttaagcaaa 152
Query: 121 aaggcttctctccatgagctttatgagagggtttgtacacttagaggaatagagcgagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aaggcttctctccatgagctttatgagagggtttgtacacttagaggaatagagcgagat 92
Query: 181 aagaccatcatatgggactactttaataagcacaagaactcacggttggttgattcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 aagaccatcatatgggactactttaataagcacaagaactcacggttggttgattcaaat 32
Query: 241 cgtaccctggaagaatcaaatttgcaaa 268
||||||||||||||||||||||||||||
Sbjct: 31 cgtaccctggaagaatcaaatttgcaaa 4
>KJC_c09066
Length = 645
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 778 tttgctccacaattcagtggttataatcagcacgattctcaag 820
|||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 102 tttgctcctcaattcagtggttataaccagcatgattctcaag 144