Jatropha Genome Database

JcCB0109541.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0109541.10 + phase: 1 /partial
         (440 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06126                                                            652   0.0  

>KJC_c06126 
          Length = 658

 Score =  652 bits (329), Expect = 0.0
 Identities = 392/409 (95%), Gaps = 3/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 32  gaggaggtgtagaaaatattacataaaaggcaataaaaaaggaagcttggaaaaatttac 91
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 521 gaggaggtgtagaaaatattacataaaaggcaataaaaaag-aagcttggaaaaatttac 463

                                                                       
Query: 92  tgatttgcctggaatgccagacaatatccattatgatggacatggccacttctggattgc 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgatttgcctggaatgccagacaatatccattatgatggacatggccacttctggattgc 403

                                                                       
Query: 152 attacccatggaaatcacaacattttggaaggcagtattcaaatatccttttgtccgaaa 211
           ||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 402 atctgccatggaaatcacaacattttggaaggcagtattcaaatatccttttatccgaaa 343

                                                                       
Query: 212 gcttgcaggaattgttttgaagcacaaaggaaatataggtgatacaggaaaaaatggagg 271
           ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct: 342 gcttgcaggaattgtttcgaagcacatacgaaatataggtgatacaggaaaaaatggagg 283

                                                                       
Query: 272 agtttttgtggtggatttggaagggaaactgatttcccattactatgatcctgagttaaa 331
           ||||||| |||||||||||||||||||||||| |||  ||||||||||||||||||||||
Sbjct: 282 agtttttatggtggatttggaagggaaactga-ttcttattactatgatcctgagttaaa 224

                                                                       
Query: 332 attgatttctagtagtgtaaaaattggaaatcatctatactgtggttctatcacctatcc 391
           || |||||||| | |||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 223 atagatttctactggtgt-aaaattggaaatcatctatactgtggttctatcatctatcc 165

                                                            
Query: 392 ctatattattcgtctaaatttggccaagtatcctgcacttgccaatacc 440
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ctatattattcgtctaaatttggccaagtatcctgcacttgccaatacc 116