Jatropha Genome Database

JcCB0109281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0109281.10 - phase: 0 
         (714 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10209                                                            781   0.0  

>KJC_c10209 
          Length = 530

 Score =  781 bits (394), Expect = 0.0
 Identities = 438/445 (98%), Gaps = 7/445 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagacttctcctagctatttcgatcccgaagatctcacttccagagaacagtttcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  atggagacttctcctagctatttcgatcccgaagatctcacttccagagaacagtttcgc 149

                                                                       
Query: 61  cgttatgggaaaaggcactcaacttcaagtgtatcgccccataaagacatttcagtgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cgttatgggaaaaggcactcaacttcaagtgtatcgccccataaagacatttcagtgtcc 209

                                                                       
Query: 121 aagttcaaggagtctagactactatacgaggggcagagtatccacagtccgacaaatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aagttcaaggagtctagactactatacgaggggcagagtatccacagtccgacaaatgct 269

                                                                       
Query: 181 gcacttcttcttgagaatatcaaacaagagactgatagcattgggtatactgatcacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gcacttcttcttgagaatatcaaacaagagactgatagcattgggtatactgatcacttt 329

                                                                       
Query: 241 gggggtacacctgcaaggacacattctacttttaaaaggagatcgtccattgatagttac 300
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 330 gggggtacacctgcaaggacacattctacttt--aaaggagatcgtccattgatagttac 387

                                                                       
Query: 301 ggaatttcagaggttgatctgggtgctgattccgtaagaagacatggaagtgaatcactt 360
           |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 388 ggaatttcagaggttgatct-ggtgctgattccgt-agaagacatggaagtgaatcactt 445

                                                                       
Query: 361 aaggcttg-caaaattgaggatgattcattgacagatattggagagac-aatttttggtc 418
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 446 aaggcttgacaaaattgaggatgattcattgacagatattggagagactaatttttggtc 505

                                    
Query: 419 -tatttgcttctcttcttgattcag 442
            ||||||||||||||||||||||||
Sbjct: 506 ttatttgcttctcttcttgattcag 530