Jatropha Genome Database

JcCB0108291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0108291.10 + phase: 0 /partial
         (567 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c13025                                                            381   e-105

>KJC_c13025 
          Length = 811

 Score =  381 bits (192), Expect = e-105
 Identities = 239/252 (94%), Gaps = 2/252 (0%)
 Strand = Plus / Minus

                                                                       
Query: 316 ttcactgatttgggcatgcctttaagcgcagtcatgagatcctgcattgagaatgctgta 375
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct: 811 ttcactgatttgggcatgcctttaagcgcagtcatgagatcctgcattaagaatggtata 752

                                                                       
Query: 376 ttgtcaaagttgccaattaatccatctaagcctattcagggtaggttcgctgatcaagac 435
           ||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct: 751 ttgtcaaagttgccaattaatccatctaagc-tattcagggtag-ttagctgatcaagac 694

                                                                       
Query: 436 tatgaatatcatcagtgtaaaggtcattctattgataattgtctcaagctccgacatgat 495
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 693 tgtgaatatcatcagtgtaaaggtcattctactgataattgtctcaagctccgacatgat 634

                                                                       
Query: 496 atccaagatttgatagatagcgggattatcaccaagcctcctgagcataataagccggcg 555
           ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| 
Sbjct: 633 atccaagatttgatagatagcggaaagatcaccaagcctcctgagcataataagccggct 574

                       
Query: 556 cccggaaaccat 567
           || |||||||||
Sbjct: 573 cctggaaaccat 562