Jatropha Genome Database

JcCB0106871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0106871.10 + phase: 0 /pseudo/partial
         (659 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05709                                                            226   5e-59

>KJC_c05709 
          Length = 732

 Score =  226 bits (114), Expect = 5e-59
 Identities = 165/182 (90%)
 Strand = Plus / Minus

                                                                       
Query: 147 tattggaatacccacttcaaaaaagactcaccaacacgctttacctctgggtattccttt 206
           |||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct: 381 tattggaatacccacttcaaaaaagactcaccaacaagctttatctctaggtattccttt 322

                                                                       
Query: 207 atctgatcttgattctcaccccaatgtcgatcttgacaccgagaacaccgataaggtcga 266
           |||||||||||||||||||||||| |||||||||| || |||   | ||||| |||| ||
Sbjct: 321 atctgatcttgattctcaccccaacgtcgatcttgccatcgacggcgccgatgaggtgga 262

                                                                       
Query: 267 ttcctatctgaatttgatgaaaggacgaggtggttctttattaagagagaaaatgattga 326
           |||| |||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 261 ttccgatctcaatttggtgaaaggacgaggtgggtctttgttaagagagaaaatgattga 202

             
Query: 327 aa 328
           ||
Sbjct: 201 aa 200



 Score = 89.7 bits (45), Expect = 8e-18
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttaaaaagattgcagcttatgaagttgtcgacttcgtccaatctggtatagttctcggcc 67
           |||||||||||||||||||| ||| ||||||||| ||||| |||||||| ||||||||||
Sbjct: 516 ttaaaaagattgcagcttataaagctgtcgactttgtccagtctggtatggttctcggcc 457

                            
Query: 68  tcagtgccgactccacc 84
           || || ||| |||||||
Sbjct: 456 tcggtaccggctccacc 440



 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 80/94 (85%), Gaps = 5/94 (5%)
 Strand = Plus / Minus

                                                                       
Query: 331 ttgttgacaagtcaaaattggttcctcatattggagctaat-----caagcctgcagaga 385
           |||||||  ||||||||||||||||||||||||||||||||      | ||||| |||| 
Sbjct: 175 ttgttgatgagtcaaaattggttcctcatattggagctaatggagctatgcctgtagagg 116

                                             
Query: 386 ctttacctttctgttggaaatttacacaagaaag 419
            | | |||||||||||||||||||||||||||||
Sbjct: 115 ttgtgcctttctgttggaaatttacacaagaaag 82



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 430 gccaagttgaggagaaacggagacagtaaaaatggtgagccttt 473
           ||||||||||| ||||| ||||||||| ||| ||||||||||||
Sbjct: 47  gccaagttgagaagaaatggagacagtgaaagtggtgagccttt 4