Jatropha Genome Database

JcCB0106211.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0106211.10 + phase: 0 /partial
         (665 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05513                                                            494   e-139

>KJC_c05513 
          Length = 596

 Score =  494 bits (249), Expect = e-139
 Identities = 280/285 (98%), Gaps = 4/285 (1%)
 Strand = Plus / Minus

                                                                       
Query: 384 gatgatatacatgtatagaaaag-ctgggaattatgaaaaag-ctcgtaaaat-gttttc 440
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct: 596 gatgatatacatgtatagaaaagactgggaattatgaaaaagactcgtaaaatagttttc 537

                                                                       
Query: 441 actaatgacccagcgagaaatcccacattctactgtcacttataatagtttaatgtcatt 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 actaatgacccagcgagaaatcccacattctactgtcacttataatagtttaatgtcatt 477

                                                                       
Query: 501 cgagaccaattacaaggaagtttcaaagatttatgaccagatgcaaagatctggtcttca 560
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 476 cgagaccaattacaaggaagtttcaaagattaatgaccagatgcaaagatctggtcttca 417

                                                                       
Query: 561 acctgatgttgtgagctatgcattactcatcaatgcttatggaaaagctcgaagggaaga 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 416 acctgatgttgtgagctatgcattactcatcaatgcttatggaaaagctcgaa-ggaaga 358

                                                        
Query: 621 agaagctttggcagtttttgaggagatgctggatgctggtgtcag 665
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agaagctttggcagtttttgaggagatgctggatgctggtgtcag 313