Jatropha Genome Database

JcCB0104661.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0104661.10 + phase: 0 
         (441 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03262                                                             82   1e-15
KJC_c00433                                                             82   1e-15

>KJC_c03262 
          Length = 777

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 209 atgactgcagatatgctgtatatgactttgattttgtgacttctgagaattgtcagaaga 268
           |||| ||| |||||||||| ||||||||||| ||||||||| | |||||||| || ||||
Sbjct: 309 atgagtgccgatatgctgtttatgactttgactttgtgactgcagagaattgccaaaaga 368

                                        
Query: 269 gcaagatatttttcattgcatggtctcct 297
           |||  || || ||||||||||||||||||
Sbjct: 369 gcagaattttcttcattgcatggtctcct 397


>KJC_c00433 
          Length = 945

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 209 atgactgcagatatgctgtatatgactttgattttgtgacttctgagaattgtcagaaga 268
           |||| ||| |||||||||| ||||| ||||||||||| ||  | |||||||| |||||||
Sbjct: 292 atgagtgccgatatgctgtttatgattttgattttgtcacggcagagaattgccagaaga 351

                                        
Query: 269 gcaagatatttttcattgcatggtctcct 297
           ||| ||| || ||||||||||||||||||
Sbjct: 352 gcaggattttcttcattgcatggtctcct 380