Jatropha Genome Database

JcCB0103361.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0103361.10 - phase: 0 
         (1407 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01197                                                            105   3e-22

>KJC_c01197 
          Length = 1840

 Score =  105 bits (53), Expect = 3e-22
 Identities = 239/301 (79%)
 Strand = Plus / Plus

                                                                       
Query: 203 ttggaacgatggttgtcagtgtctaccttgaaagagcagatgcatttaagtacttgggca 262
           ||||||| |||||||| ||||| || ||||| |||||||||   || ||||||||||| |
Sbjct: 168 ttggaaccatggttgttagtgtttatcttgagagagcagatatgttcaagtacttgggta 227

                                                                       
Query: 263 aattactttcctggaaaagcctaggggctaaggacttgatttttagagtctgcttagttt 322
           | || ||||| |||||||||   || || ||||||||| ||| | || | ||| | ||||
Sbjct: 228 agttgctttcatggaaaagcaagggagccaaggacttgctttgtcgaatttgcctggttt 287

                                                                       
Query: 323 ctgcaattacgagtgcttttttcactaacgacacttcttgtattgtcttgactcaaatgg 382
           |||| ||| |||||||  ||||||| || ||||| |||||| | || || ||| || | |
Sbjct: 288 ctgccatttcgagtgcccttttcaccaatgacacctcttgtgtagttttaactgaatttg 347

                                                                       
Query: 383 tactcaaaattgcaagacaacgtaatctccctccccatcctttcttattagcaatcgcct 442
           |||| |||||||| || |||| |||||| ||||| || || ||| |  | ||  | ||||
Sbjct: 348 tactgaaaattgctaggcaacataatctacctcctcacccattcctgcttgcccttgcct 407

                                                                       
Query: 443 cgagtgcaaacattggatcttctgcaactccaattggcaatcctcaaaatctaattatag 502
           | |||||||| ||||| ||||| || |||||||||||||| |||||||||||  ||||||
Sbjct: 408 caagtgcaaatattggttcttcagccactccaattggcaaccctcaaaatctggttatag 467

            
Query: 503 c 503
           |
Sbjct: 468 c 468



 Score = 89.7 bits (45), Expect = 2e-17
 Identities = 141/173 (81%)
 Strand = Plus / Plus

                                                                        
Query: 814  tggaaatcttgtgtttatctagtaaccatcggaatgttgattgcattgcttatgggtgtg 873
            |||||||| | ||| ||||| || ||| | || ||||| ||||| |||||||||||| | 
Sbjct: 1013 tggaaatcatctgtctatcttgttaccttaggtatgttaattgctttgcttatgggtctt 1072

                                                                        
Query: 874  aatatatcttggactgcgttgactgctgcactttctctcatggttcttgattttaaagat 933
            ||||| || ||||| ||  | |||||||| ||  ||||  | ||||||||||| || |||
Sbjct: 1073 aatatgtcatggaccgcaattactgctgctctagctcttgttgttcttgatttcaaggat 1132

                                                                 
Query: 934  gctcagccttgccttgagaaggtgtcatattctcttttggttttcttttgtgg 986
            |||| ||| |||||||| ||||| || |||||||||||| |||||||||||||
Sbjct: 1133 gctcggccatgccttgaaaaggtctcctattctcttttgattttcttttgtgg 1185