Jatropha Genome Database
- JcCB0101051.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0101051.10 + phase: 2 /partial
(484 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c02525 198 9e-51
KJC_c04204 117 3e-26
KJC_s19960 115 1e-25
>KJC_c02525
Length = 800
Score = 198 bits (100), Expect = 9e-51
Identities = 274/332 (82%)
Strand = Plus / Minus
Query: 14 gtggatgttgttctgacgatcccaaagggcacattattcccaatgtgtggaatgaacctt 73
||||||| ||| |||| || |||||||| || |||||||| ||||| |||||||| ||
Sbjct: 726 gtggatgctgtaatgacaattccaaagggaactttattccctatgtgcggaatgaatctg 667
Query: 74 gcttttaacagggagctgattggtcctgccatgtactttggactcatgggtgatggtcaa 133
|| || ||| | || ||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 666 gcattcaaccgtgaattgattggtcctgcaatgtacttcggtctcatgggtgatggtcag 607
Query: 134 cccattggcagatatgatgatatgtgggctggctggtgtgccaaggtaatctgtgaccat 193
|| ||||| | |||||||||||||||||||||||||| ||||| || || || |||
Sbjct: 606 ccgattggtcgctatgatgatatgtgggctggctggtgcatgaaggttatatgcgatcat 547
Query: 194 ttgggtcttggggtgaaaacagggttgccatacatttggcatagtaaagcaagcaaccca 253
|||||| | || || |||||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 546 ttgggtttaggagtcaaaacaggattgccttacatttggcacagcaaagcaagcaaccca 487
Query: 254 tttgtcaatttgaagaaggaatacaaaggcatatattggcaggaagacattatcccattt 313
||||| || | || |||||||||||||| || || ||||||||||| | || ||||||
Sbjct: 486 tttgtgaaccttaaaaaggaatacaaaggaatctactggcaggaagagctgattccattt 427
Query: 314 ttccaatctgttgtcctcccaaaagagtgcac 345
|||||||||| ||| || ||||| || |||||
Sbjct: 426 ttccaatctgctgttcttccaaaggactgcac 395
>KJC_c04204
Length = 1232
Score = 117 bits (59), Expect = 3e-26
Identities = 231/287 (80%), Gaps = 1/287 (0%)
Strand = Plus / Minus
Query: 50 ttcccaatgtgtggaatgaaccttgcttttaacagggagctgattggtcctgccatgtac 109
|||||||||||||| |||||| | || |||||| | ||| ||||||| || || |||||
Sbjct: 687 ttcccaatgtgtggcatgaacttggcatttaaccgtgagttgattggaccggcaatgta- 629
Query: 110 tttggactcatgggtgatggtcaacccattggcagatatgatgatatgtgggctggctgg 169
||||| ||||||||||||||||| || |||| | ||||| ||||||||||||||||||
Sbjct: 628 tttgggctcatgggtgatggtcagccagttggacgctatgacgatatgtgggctggctgg 569
Query: 170 tgtgccaaggtaatctgtgaccatttgggtcttggggtgaaaacagggttgccatacatt 229
|| ||||| || || |||||| |||| || || ||||| || ||||| || ||
Sbjct: 568 tgcatgaaggtgatatgcgaccatatgggatggggagttaaaaccggtttgccctatata 509
Query: 230 tggcatagtaaagcaagcaacccatttgtcaatttgaagaaggaatacaaaggcatatat 289
||||| || ||||| |||||||||||||| || |||| || || ||||| ||||||| |
Sbjct: 508 tggcacagcaaagctagcaacccatttgttaacctgaaaaaagagtacaagggcatattt 449
Query: 290 tggcaggaagacattatcccatttttccaatctgttgtcctcccaaa 336
||||||||| | | |||||||| |||||||||||||| || |||||
Sbjct: 448 tggcaggaacaactgatcccattcttccaatctgttgtgcttccaaa 402
>KJC_s19960
Length = 438
Score = 115 bits (58), Expect = 1e-25
Identities = 133/158 (84%)
Strand = Plus / Minus
Query: 14 gtggatgttgttctgacgatcccaaagggcacattattcccaatgtgtggaatgaacctt 73
||||||| ||| |||| || |||||||| || |||||||| ||||| |||||||| ||
Sbjct: 361 gtggatgctgtaatgacaattccaaagggaactttattccctatgtgcggaatgaatctg 302
Query: 74 gcttttaacagggagctgattggtcctgccatgtactttggactcatgggtgatggtcaa 133
|| || ||| | || ||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 301 gcattcaaccgtgaattgattggtcctgcaatgtacttcggtctcatgggtgatggtcag 242
Query: 134 cccattggcagatatgatgatatgtgggctggctggtg 171
|| ||||| | ||||||||||||||||||||||||||
Sbjct: 241 ccgattggtcgctatgatgatatgtgggctggctggtg 204
Score = 77.8 bits (39), Expect = 2e-14
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 239 aaagcaagcaacccatttgtcaatttgaagaaggaatacaaaggcatatattggcaggaa 298
|||||||||||||||||||| || | || |||||||||||||| || || |||||||||
Sbjct: 4 aaagcaagcaacccatttgtgaaccttaaaaaggaatacaaaggaatctactggcaggaa 63
Query: 299 gacattatcccatttttccaatctgttgtcctcccaaaagagtgcac 345
|| | || |||||||||||||||| ||| || ||||| || |||||
Sbjct: 64 gagctgattccatttttccaatctgctgttcttccaaaggactgcac 110