Jatropha Genome Database

JcCB0100521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0100521.10 - phase: 0 /partial
         (321 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11433                                                            480   e-135

>KJC_c11433 
          Length = 326

 Score =  480 bits (242), Expect = e-135
 Identities = 277/282 (98%), Gaps = 5/282 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatctgctcagcaagacaatatgcaatggggccataggcaaattgagcctgagaatacc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 50  tcatctgctcagcaagacaatatgcaatggg-ccataggcaaattgagcctgagaatacc 108

                                                                       
Query: 61  tcagtcactgcagggctgggacttggtttaccttgtgatggaggttctgggttaaaggaa 120
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| 
Sbjct: 109 tcagtcactgcagggctgggacttggtt-acct-gtgatggaggttctgggttaaagga- 165

                                                                       
Query: 121 ttgatgatgggaactccctctgtttttggtcctaagcaaacaacccttgatttccttgga 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 166 ttgatgatgggaactccctctgtttttggtcctaagcaaaca-cccttgatttccttgga 224

                                                                       
Query: 181 ttgggtatggctgctggtggaagccctagtagtggtttgtcagctctaattacttctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttgggtatggctgctggtggaagccctagtagtggtttgtcagctctaattacttctatt 284

                                                     
Query: 241 ggtagtggcatggatgtggctgccgcagcagcttcttttgga 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ggtagtggcatggatgtggctgccgcagcagcttcttttgga 326