Jatropha Genome Database

JcCB0100471.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0100471.20 + phase: 0 /partial
         (295 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02621                                                            585   e-167

>KJC_c02621 
          Length = 658

 Score =  585 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcagtgtcaatatcgagaaggattttacgttctcttgggtccttacaagttggacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atggcagtgtcaatatcgagaaggattttacgttctcttgggtccttacaagttggacgc 396

                                                                       
Query: 61  tgtaaatctccatgtctcgcatatcactcatttcaggcttcccaagatttttgcggccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgtaaatctccatgtctcgcatatcactcatttcaggcttcccaagatttttgcggccac 336

                                                                       
Query: 121 gtctcctggggttgcttatttcctgctgaatcttctagctttatcaagggtgaagcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtctcctggggttgcttatttcctgctgaatcttctagctttatcaagggtgaagcagct 276

                                                                       
Query: 181 tctctcccttatcggagcttttcaacatctattctgactcctggatcaagtgatggtgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tctctcccttatcggagcttttcaacatctattctgactcctggatcaagtgatggtgca 216

                                                                  
Query: 241 ttcccctcagatttgttatccacaaaggctgtgctaacaccagagcgtaacatag 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttcccctcagatttgttatccacaaaggctgtgctaacaccagagcgtaacatag 161