Jatropha Genome Database

JcCB0099951.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0099951.10 + phase: 0 
         (801 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07873                                                             80   9e-15

>KJC_c07873 
          Length = 582

 Score = 79.8 bits (40), Expect = 9e-15
 Identities = 112/136 (82%)
 Strand = Plus / Plus

                                                                       
Query: 419 ttgaatatgctgttttgcatctcaaggtggaaaacattgttgtgattggtcacagtgctt 478
           |||||||||| ||  ||||||| |||||||| || ||||| || ||||| || |||   |
Sbjct: 141 ttgaatatgcagtactgcatctaaaggtggagaatattgtagtcattggccatagttgct 200

                                                                       
Query: 479 gtggtggaattaaggggctgatgtctttcccatttgatgggaacaaatctactgatttca 538
           ||||||| ||||||||||| |||||| |||||  |||||||| ||  |||| ||| ||||
Sbjct: 201 gtggtggtattaaggggctaatgtctatcccagatgatgggagcacttctagtgacttca 260

                           
Query: 539 tagaagattgggtcag 554
           ||||| ||||||||||
Sbjct: 261 tagaaaattgggtcag 276



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                       
Query: 634 aaggaagctgtcaatgtatcacttggaaacttgctgacttacccatttgtgagacatgga 693
           ||||| ||||| ||||||||||| ||| || || |||| || |||||||| | | | |||
Sbjct: 356 aaggaggctgtgaatgtatcactgggagacctgttgacatatccatttgttaaagaggga 415

                                          
Query: 694 ttggtgaagaaaacactggcattgaagggag 724
            || |||||||||| ||||||||||| ||||
Sbjct: 416 gtgttgaagaaaactctggcattgaaaggag 446