Jatropha Genome Database

JcCB0097621.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0097621.30 + phase: 0 
         (861 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10868                                                            149   1e-35
KJC_c02009                                                             58   4e-08

>KJC_c10868 
          Length = 683

 Score =  149 bits (75), Expect = 1e-35
 Identities = 307/383 (80%), Gaps = 1/383 (0%)
 Strand = Plus / Plus

                                                                       
Query: 72  tggtaacttctaccaagattttgacattacttggggagatggccgcgctaagatactcaa 131
           |||||||||||||||||| ||||| || ||||||||| | ||  | |  ||||| || ||
Sbjct: 263 tggtaacttctaccaagaatttgatataacttggggacaaggtagaggaaagatcctaaa 322

                                                                       
Query: 132 caatggccagcttcttacacttaacctagacaaagcctccggttctggatttcaatccag 191
           |||||| ||||||||| | |||   || || ||| | || || ||||| |||||||| | 
Sbjct: 323 caatggtcagcttctttctctttctcttgataaaacttcaggctctggctttcaatcaaa 382

                                                                       
Query: 192 gaatgagtatttgttcggaaagattgacatgcaactcaagcttgttcctggcaattctgc 251
           |||   |||| | || || |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 383 gaaaatgtatctttttggcaagattgatatgcaactcaagctagttcctggcaactctgc 442

                                                                       
Query: 252 gggcacggtcactgcctattatctatcctcaaaaggttctacttgggatgagatagattt 311
            ||||| ||||||||||||||| |    |||  ||| | ||| |||||||| ||||| ||
Sbjct: 443 tggcactgtcactgcctattatatgaaatcaccaggatttacatgggatgaaatagactt 502

                                                                       
Query: 312 tgagttcttgggaaatttgagtggagatccttacattcttcacaccaatgtgtttagcca 371
           ||||||| ||||||| ||||||||  | |||||||  ||||| |||||||||| ||||||
Sbjct: 503 tgagttcctgggaaacttgagtggtcaaccttacacacttcataccaatgtgtatagcca 562

                                                                       
Query: 372 aggcaaaggaaacagagagcaac-aattttatttatggtttgacccaactgctgatttcc 430
           |||||  ||  | |||||||||| ||||  |  | |||||||||||||| ||  |||| |
Sbjct: 563 aggcaggggtgagagagagcaacaaattccacctttggtttgacccaacagcacattttc 622

                                  
Query: 431 acacctattccattctttggaat 453
           |||||||||| ||||||||||||
Sbjct: 623 acacctattctattctttggaat 645


>KJC_c02009 
          Length = 802

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 298 gatgagatagattttgagttcttgggaaa 326
           |||||||||||||||||||||||||||||
Sbjct: 312 gatgagatagattttgagttcttgggaaa 340



 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                       
Query: 540 tcaaccaatgagaatctactcaagtctgtggaatgcagatgattgggctacaagaggtgg 599
           |||||||||||   | |||||||| |||||||| |||||||||||||| || || || ||
Sbjct: 554 tcaaccaatgaagttatactcaagcctgtggaacgcagatgattgggcaactaggggagg 613

                              
Query: 600 tcttgtgaagacagattgg 618
           | | | |||||||||||||
Sbjct: 614 tttggagaagacagattgg 632