Jatropha Genome Database

JcCB0097621.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0097621.20 - phase: 0 /partial
         (467 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10868                                                            168   8e-42
KJC_c02009                                                             50   5e-06

>KJC_c10868 
          Length = 683

 Score =  168 bits (85), Expect = 8e-42
 Identities = 311/385 (80%), Gaps = 1/385 (0%)
 Strand = Plus / Plus

                                                                       
Query: 72  tggtaacttctaccaagattttgacattacttggggagatggccgcgctaagatactcaa 131
           |||||||||||||||||| ||||| || ||||||||| | ||  | |  ||||| || ||
Sbjct: 263 tggtaacttctaccaagaatttgatataacttggggacaaggtagaggaaagatcctaaa 322

                                                                       
Query: 132 caatggccagcttcttacactgaaccttgacaaagcctccggttctggatttcaatcaag 191
           |||||| ||||||||| | ||    ||||| ||| | || || ||||| |||||||||| 
Sbjct: 323 caatggtcagcttctttctctttctcttgataaaacttcaggctctggctttcaatcaaa 382

                                                                       
Query: 192 gaatgagtatttgtttggaaagattgacatgcaactcaagcttgttcctggcaattctgc 251
           |||   |||| | ||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 383 gaaaatgtatctttttggcaagattgatatgcaactcaagctagttcctggcaactctgc 442

                                                                       
Query: 252 aggcacggtcactgcctattatctatcctcaaaagggtctacttgggatgagatagactt 311
            ||||| ||||||||||||||| |    |||  ||| | ||| |||||||| ||||||||
Sbjct: 443 tggcactgtcactgcctattatatgaaatcaccaggatttacatgggatgaaatagactt 502

                                                                       
Query: 312 tgagttcttgggaaatttgagtggagatccttacattcttcacaccaatgtgtttagcca 371
           ||||||| ||||||| ||||||||  | |||||||  ||||| |||||||||| ||||||
Sbjct: 503 tgagttcctgggaaacttgagtggtcaaccttacacacttcataccaatgtgtatagcca 562

                                                                       
Query: 372 aggcaaaggaaacagagagcaac-aattctatttatggttcgacccaacttctgatttcc 430
           |||||  ||  | |||||||||| ||||| |  | ||||| ||||||||  |  |||| |
Sbjct: 563 aggcaggggtgagagagagcaacaaattccacctttggtttgacccaacagcacattttc 622

                                    
Query: 431 acacctattccattctttggaatcc 455
           |||||||||| ||||||||||||||
Sbjct: 623 acacctattctattctttggaatcc 647


>KJC_c02009 
          Length = 802

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 298 gatgagatagactttgagttcttgggaaa 326
           ||||||||||| |||||||||||||||||
Sbjct: 312 gatgagatagattttgagttcttgggaaa 340