Jatropha Genome Database

JcCB0097621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0097621.10 + phase: 1 /pseudo/partial
         (379 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02009                                                             54   2e-07

>KJC_c02009 
          Length = 802

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 225 ccaatctgtcttcacaagaccacctcttgtagcccaatcatctgcattccacagacttga 284
           ||||||||||||| | | ||| || || || |||||||||||||| |||||||| |||||
Sbjct: 632 ccaatctgtcttctccaaacctcccctagttgcccaatcatctgcgttccacaggcttga 573

                              
Query: 285 gtagattctcattggttga 303
           ||| |   |||||||||||
Sbjct: 572 gtataacttcattggttga 554