Jatropha Genome Database

JcCB0096461.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0096461.10 - phase: 2 /partial
         (1027 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06820                                                             76   2e-13
KJC_c02705                                                             60   1e-08

>KJC_c06820 
          Length = 453

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                       
Query: 833 agaatgattaaaaatagagagtcagccgcaaggtcacgggctcgcaagcaggcctacaca 892
           ||||||||||| || ||||||||||| ||||| |||||||||||||||||||| || || 
Sbjct: 97  agaatgattaagaacagagagtcagctgcaagatcacgggctcgcaagcaggcttatact 38

                                     
Query: 893 ctggaactagaagcagaagttgcaaa 918
            ||||  | ||||| |||||||||||
Sbjct: 37  atggagttggaagctgaagttgcaaa 12


>KJC_c02705 
          Length = 1118

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 78/94 (82%)
 Strand = Plus / Plus

                                                                        
Query: 816  ttgagagaaggcaccggagaatgattaaaaatagagagtcagccgcaaggtcacgggctc 875
            |||||||  |||| ||||| ||||| || ||||||||||| || ||||||||  | ||||
Sbjct: 954  ttgagaggcggcaacggaggatgatcaagaatagagagtctgctgcaaggtctagagctc 1013

                                              
Query: 876  gcaagcaggcctacacactggaactagaagcaga 909
            | || ||||| |||||| | ||||||||||||||
Sbjct: 1014 gaaaacaggcatacacagttgaactagaagcaga 1047