Jatropha Genome Database

JcCB0088711.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0088711.30 - phase: 0 
         (1545 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10953                                                            486   e-137
KJC_c07963                                                             64   1e-09

>KJC_c10953 
          Length = 251

 Score =  486 bits (245), Expect = e-137
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1262 gtgtgcctttgatttgttggccatttttcgcagagcaacaaacaaattgctggttttgtt 1321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245  gtgtgcctttgatttgttggccatttttcgcagagcaacaaacaaattgctggttttgtt 186

                                                                        
Query: 1322 gtaataagtggaaaattggtattgaaatagaaaaagatgttaaaagaaatgagattgaaa 1381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185  gtaataagtggaaaattggtattgaaatagaaaaagatgttaaaagaaatgagattgaaa 126

                                                                        
Query: 1382 gattagttcaggagctgattgatggtaagcaaggaaaagaactgaagaagaaagtgatgg 1441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125  gattagttcaggagctgattgatggtaagcaaggaaaagaactgaagaagaaagtgatgg 66

                                                                        
Query: 1442 aatggaaactgaaagcagaagaggctactgctagtgctaatggatcttcttatgcgaatc 1501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65   aatggaaactgaaagcagaagaggctactgctagtgctaatggatcttcttatgcgaatc 6

                 
Query: 1502 tagac 1506
            |||||
Sbjct: 5    tagac 1


>KJC_c07963 
          Length = 763

 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1199 cttccattggagggtttttgactcataatggatggaactcaacgttagagagtttgtgcg 1258
            |||| |||||||||||||| || |||| ||||||||| || ||| | ||| || | || |
Sbjct: 353  cttcgattggagggtttttaacacatagtggatggaattctacgcttgagggtatttgtg 294

                                                        
Query: 1259 gtggtgtgcctttgatttgttggccatttttcgcagagcaacaa 1302
             ||| |||||  ||||||| ||||| ||||||||||||||||||
Sbjct: 293  ctggcgtgccgatgatttgctggccttttttcgcagagcaacaa 250