Jatropha Genome Database

JcCB0088711.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0088711.10 + phase: 1 /partial
         (527 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07963                                                            936   0.0  
KJC_c10953                                                             58   2e-08

>KJC_c07963 
          Length = 763

 Score =  936 bits (472), Expect = 0.0
 Identities = 519/527 (98%), Gaps = 7/527 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaattaatagagttcgcttggggacttgctaatagcaataaaacgttcttatgggtaa 60
           |||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||
Sbjct: 526 aacaattaatagagttcgcttggg-acttgctaatagcat--aaacgttcttatgggtaa 470

                                                                       
Query: 61  ttaggccggaccttgtggccggcgacacggcagttcttccgccggaatttgttacactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 469 ttaggccggaccttgtggccggcgacacggcagttcttccgccggaatttgttacacta- 411

                                                                       
Query: 121 caaaagaaagaggtcgtttagcaagttggtgtccacaggaacaagtgctaagccattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 caaaagaaagaggtcgtttagcaagttggtgtccacaggaacaagtgctaagccattctt 351

                                                                       
Query: 181 cgattggagggtttttaacacatagtggatggaattctacgcttgagggtatttgtgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cgattggagggtttttaacacatagtggatggaattctacgcttgagggtatttgtgctg 291

                                                                       
Query: 241 gcgtgccgatgatttgctggccttttttcgcagagcaacaaaccaattgccgatacagtt 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 290 gcgtgccgatgatttgctggccttttttcgcagagcaac-aaccaattgccgatacagtt 232

                                                                       
Query: 301 gcgtagaatggggcattggcatggaaataaacagtgatgttaaacgagatgaagttgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gcgtagaatggggcattggcatggaaataaacagtgatgttaaacgagatgaagttgaga 172

                                                                       
Query: 361 ttcttgtaagagagttaatggtaggagtaaagggtcaagaaatgaaaaagaaagcgatgg 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 171 ttcttgtaagagagttaatggtaggagtaaagggtcaagaaatg-aaaagaaagcgatgg 113

                                                                       
Query: 421 aatggaaaaagatggcagaagaggcaatcacatgtcctaatggttcttctttccagaatt 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aatgg-aaaagatggcagaagaggcaatcacatgtcctaatggttcttctttccagaatt 54

                                                          
Query: 481 tggacaagttcattaaccatcacctcttatcctctacatatcatgag 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  tggacaagttcattaaccatcacctcttatcctctacatatcatgag 7


>KJC_c10953 
          Length = 251

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 250 tgatttgctggccttttttcgcagagcaacaaaccaattgc 290
           ||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 236 tgatttgttggccatttttcgcagagcaacaaacaaattgc 196