Jatropha Genome Database

JcCB0086771.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0086771.10 - phase: 1 /pseudo/partial
         (1247 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04067                                                            147   8e-35

>KJC_c04067 
          Length = 1003

 Score =  147 bits (74), Expect = 8e-35
 Identities = 336/422 (79%), Gaps = 1/422 (0%)
 Strand = Plus / Plus

                                                                        
Query: 637  ctgatgatgttagggtcatgacaagaaagagtatggacgatcctggcaggcctcctggta 696
            |||||||||||||||| |||||  |||||||  | || ||||| || || |||||||| |
Sbjct: 231  ctgatgatgttagggttatgactcgaaagagcgtagatgatccagggagacctcctggca 290

                                                                        
Query: 697  ttgtacttagcgcagcaacttctttctggattccagttcctcctaagaaagtatttgagt 756
            |||| ||||| || || |||||||||||| ||||||||||||| ||||  || ||||| |
Sbjct: 291  ttgtgcttagtgctgctacttctttctggcttccagttcctccaaagagggtttttgatt 350

                                                                        
Query: 757  tcctaagtgatgagaatcatcgaagcgagtgggatatcctttcaaatggtggccaagttc 816
            | ||  | ||||||||    ||||| |||||||||||||| |||||||||||    ||||
Sbjct: 351  ttctccgcgatgagaactcgcgaagtgagtgggatatcctatcaaatggtggagttgttc 410

                                                                        
Query: 817  aagaaatggctcacattgctaatggacgcgatccaggaaactatgtttctttgctccgtg 876
            |||||||||| || |||||||||||  | ||| | || || | ||| ||| | || || |
Sbjct: 411  aagaaatggcgcatattgctaatggcagggatactggcaattgtgtgtctcttcttcgag 470

                                                                        
Query: 877  tgaatagtgcaaattcaagccaaagcaacatgctgatactacaagagagctgcacagact 936
            | |||||||||||||||||||||||||||||||| ||  | |||||||| ||||| ||  
Sbjct: 471  taaatagtgcaaattcaagccaaagcaacatgcttat-ttgcaagagagttgcactgatc 529

                                                                        
Query: 937  ctactggatcgtatgtcatatatgcaccagtagacattgcagcaatgaatatagtgctga 996
            | || |  || |  ||||| ||||| || || || ||||  ||||||||| | || || |
Sbjct: 530  caacagcctctttcgtcatctatgctcctgtcgatattgttgcaatgaatgttgtactta 589

                                                                        
Query: 997  gtggaggagacccagattatgtagctctccttccatcaggttttgctatacttcctgatg 1056
             ||| ||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||
Sbjct: 590  atggtggagatccagattatgtagctcttcttccttctgggtttgctattcttcccgatg 649

              
Query: 1057 ga 1058
            ||
Sbjct: 650  ga 651



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 100/119 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1113 actgttgcatttcaaatattagttgattcagttccaactgcaaaactctctcttggatca 1172
            |||||||||||||| || ||||||||||| ||||| || |||||||| |||||||| |||
Sbjct: 712  actgttgcatttcagattttagttgattcggttcctacagcaaaactttctcttgggtca 771

                                                                       
Query: 1173 gtagcaacagtaaacaatctaattaagtgcacagttgaaaggatcaaggctgcagtatc 1231
            || ||||| || |||||||| ||   |||||| ||||| ||||| ||||| ||| ||||
Sbjct: 772  gttgcaactgtcaacaatctgatcgcgtgcactgttgagaggattaaggcagcattatc 830