Jatropha Genome Database
- JcCB0085061.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0085061.20 + phase: 1 /TE/pseudo/partial
(758 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c04660 591 e-168
KJC_c08597 440 e-123
KJC_c12872 283 3e-76
>KJC_c04660
Length = 606
Score = 591 bits (298), Expect = e-168
Identities = 366/386 (94%), Gaps = 2/386 (0%)
Strand = Plus / Minus
Query: 7 caatgtggtacagcaatttggcatgcagaagagtacttctgatcattccgtatttttcag 66
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 caatgtggtacatcaatttggcatgcagaagagtacttctgatcattctgtatttttcag 504
Query: 67 aagtactaacactggtttcattctacttgtggtttatgttgatgatattgttattacagg 126
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 aagtactaagactggtttgattctacttgtggtttatgttgatgacattgttattacagg 444
Query: 127 gagtgattcagtcggcattacatcactcaagtcatttctccagactcagttccaaacaaa 186
||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct: 443 gagtgattcagccggcattacatcactcaagtcatttctccagacccaattccagacaaa 384
Query: 187 agacttaggattattgaagtattttttgggtattgaagtgtctaggtgtaagagaggcat 246
|||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 agacttaggattgttg-agta-tttttgggtattgaagtatctaggtgtaagagaggcat 326
Query: 247 cttcttatctcaaaagaagcatgtccttgacttaccgaaggaaactggaaagttgggtgc 306
|||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 cttcttatctcaaaggaagtatgtccttgacttactgaaggaaactggaaagttgggtgc 266
Query: 307 caagccatgcagtgctccaatgactcctaatttgcaactttcaattggtggtgagctatt 366
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct: 265 caagccatgcagtgctccaatgactcctaatttgcaactttcaattgatggtaagatatt 206
Query: 367 tgatgatcctgagatgtatagaagat 392
||||||||| ||||||||||||||||
Sbjct: 205 tgatgatcccgagatgtatagaagat 180
>KJC_c08597
Length = 545
Score = 440 bits (222), Expect = e-123
Identities = 287/306 (93%), Gaps = 2/306 (0%)
Strand = Plus / Minus
Query: 452 ggtggaaacctgatatcgtggaacagtaagaaacaaaatgtagtctcaccgatcgagtgc 511
||||||||| ||||||| |||| || |||||||||||||||||||||| ||||||||
Sbjct: 530 ggtggaaacttgatatcatggaggagcaagaaacaaaatgtagtctcac-gatcgagtaa 472
Query: 512 taaatcaaaatatcgagctatggcacaatctgcttgtgaattaatttggattcgtcagtt 571
||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 471 taaatcagaatatcgagcaatggcacaatctgcttgtgaattaatttggat-cgtcagtt 413
Query: 572 attagatgaaattggcttcaagtcattcttgcctgcaaagttatggtgtgataatcaagc 631
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 412 gttagaggaaattggcttcaagtcatccttgcctgcaaagttatggtgtgataatcaagc 353
Query: 632 tgctcttcacattgcatcaaatccagtatgccatgaacgaacaaaacatatcaagattga 691
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct: 352 tgctcttcacattgcatcaaatccagtattccatgaacgaacaaaacatatcgagattaa 293
Query: 692 ttgtcatttcattcgtgaaaagatacaacagggtgttatctctacagggcacgttaaaac 751
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 292 ttgtcatttcattcgtgaaaagatacaacaaggtgttatctctacaggacacgttaaaac 233
Query: 752 aagtga 757
||||||
Sbjct: 232 aagtga 227
>KJC_c12872
Length = 692
Score = 283 bits (143), Expect = 3e-76
Identities = 164/171 (95%)
Strand = Plus / Plus
Query: 587 cttcaagtcattcttgcctgcaaagttatggtgtgataatcaagctgctcttcacattgc 646
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttcaagtcatccttgcctgcaaagttatggtgtgataatcaagctgctcttcacattgc 350
Query: 647 atcaaatccagtatgccatgaacgaacaaaacatatcaagattgattgtcatttcattcg 706
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 351 atcaaatccagtattccatgaacgaacaaaacatatcgagattgattgtcatttcattcg 410
Query: 707 tgaaaagatacaacagggtgttatctctacagggcacgttaaaacaagtga 757
||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 411 tgaaaagatacaacaaagtattatctctacagggtacgttaaaacaagtga 461