Jatropha Genome Database

JcCB0085061.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0085061.10 - phase: 0 /partial
         (549 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04863                                                            264   2e-70
KJC_s18106                                                            190   2e-48

>KJC_c04863 
          Length = 720

 Score =  264 bits (133), Expect = 2e-70
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gataaaggttcaaagctagaactttttgccaaagagacattcgatgcttctttgtcttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gataaaggttcaaagctagaactttttgccaaagagacattcgatgcttctttgtcttgg 523

                                                                       
Query: 61  aaggacatagactggttaaggtcaattacaaacttgccaattctcattaagggtgtactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaggacatagactggttaaggtcaattacaaacttgccaattctcattaagggtgtactt 583

                        
Query: 121 actcgtgaagatg 133
           |||||||||||||
Sbjct: 584 actcgtgaagatg 596



 Score =  232 bits (117), Expect = 7e-61
 Identities = 119/120 (99%)
 Strand = Plus / Plus

                                                                       
Query: 172 aaggctgtggaagttggcgtttctgggattgtggtctctaatcatggaggtcgccagcta 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaggctgtggaagttggcgtttctgggattgtggtctctaatcatggaggtcgccagcta 660

                                                                       
Query: 232 aactacagtccagctaccatcactgttctggaggaggtggtacgtgctgtaggagggaaa 291
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aactacngtccagctaccatcactgttctggaggaggtggtacgtgctgtaggagggaaa 720


>KJC_s18106 
          Length = 518

 Score =  190 bits (96), Expect = 2e-48
 Identities = 96/96 (100%)
 Strand = Plus / Minus

                                                                       
Query: 166 gcaataaaggctgtggaagttggcgtttctgggattgtggtctctaatcatggaggtcgc 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  gcaataaaggctgtggaagttggcgtttctgggattgtggtctctaatcatggaggtcgc 37

                                               
Query: 226 cagctaaactacagtccagctaccatcactgttctg 261
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  cagctaaactacagtccagctaccatcactgttctg 1



 Score =  143 bits (72), Expect = 5e-34
 Identities = 72/72 (100%)
 Strand = Plus / Minus

                                                                       
Query: 62  aggacatagactggttaaggtcaattacaaacttgccaattctcattaagggtgtactta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aggacatagactggttaaggtcaattacaaacttgccaattctcattaagggtgtactta 108

                       
Query: 122 ctcgtgaagatg 133
           ||||||||||||
Sbjct: 107 ctcgtgaagatg 96



 Score =  127 bits (64), Expect = 3e-29
 Identities = 64/64 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataaaggttcaaagctagaactttttgccaaagagacattcgatgcttctttgtcttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gataaaggttcaaagctagaactttttgccaaagagacattcgatgcttctttgtcttgg 333

               
Query: 61  aagg 64
           ||||
Sbjct: 332 aagg 329