Jatropha Genome Database

JcCB0084431.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0084431.10 + phase: 0 /partial
         (1138 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09167                                                            611   e-174

>KJC_c09167 
          Length = 511

 Score =  611 bits (308), Expect = e-174
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 309 cgttcctgaagtagagatagtgggcagaactcacaaggatactcctatagattttgtgga 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgttcctgaagtagagatagtgggcagaactcacaaggatactcctatagattttgtgga 60

                                                                       
Query: 369 agctgaggcaactggcaatactgttattggtgtacaacaggaaaaagatgtccatgcact 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agctgaggcaactggcaatactgttattggtgtacaacaggaaaaagatgtccatgcact 120

                                                                       
Query: 429 agctcagtctcctgagtctcatccagaggataggttacaaaatgcaatagtggaaacaac 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agctcagtctcctgagtctcatccagaggataggttacaaaatgcaatagtggaaacaac 180

                                                                       
Query: 489 tgaaaaagtgataagagaaatgattgaggtgggaagctctattcagattgaaaatccaaa 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaaaaagtgataagagaaatgattgaggtgggaagctctattcagattgaaaatccaaa 240

                                                                       
Query: 549 gcagcttgataatgctgaggaatctgacaagattttggccactcaagaagcaaaaatgcc 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcagcttgataatgctgaggaatctgacaagattttggccactcaagaagcaaaaatgcc 300

                   
Query: 609 caataagg 616
           ||||||||
Sbjct: 301 caataagg 308



 Score =  359 bits (181), Expect = 1e-98
 Identities = 202/205 (98%), Gaps = 3/205 (1%)
 Strand = Plus / Plus

                                                                       
Query: 692 aggaaactgctgaaaaggagaatgtagccgtacctagtaataaaagacaaatgaattcgt 751
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aggaaactgctgaaaaggagaatgtagccgtacctagtaataaaagacaaatgaattcgt 365

                                                                       
Query: 752 catcaaaat-cttcaagtcagagtagagcttctaaagtcccgaagccttctatcaaacag 810
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 catcaaaatacttcaagtcagagtagagcttctaaagtcccgaagccttctatcaaacag 425

                                                                       
Query: 811 gttaattcc-acacagctgaagggtggaacaaatgtcaatccaagcaaaaagaaatctct 869
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gttaattcctacacagctgaagggtggaacaaatgtcaatccaagcaaaaagaaatctct 485

                                    
Query: 870 ggaag-agttgatcgatagaaagag 893
           ||||| |||||||||||||||||||
Sbjct: 486 ggaagaagttgatcgatagaaagag 510