Jatropha Genome Database

JcCB0083791.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0083791.10 + phase: 0 /pseudo/partial
         (1023 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09702                                                            811   0.0  

>KJC_c09702 
          Length = 479

 Score =  811 bits (409), Expect = 0.0
 Identities = 450/457 (98%), Gaps = 5/457 (1%)
 Strand = Plus / Plus

                                                                       
Query: 506 cagttggggga-ttgttctcaaaaga-ggta-ctagaagcgctcaaaggttcaacttcaa 562
           ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 24  cagttgggggagttgttctcaaaagaaggtaactagaagcgctcaaaggttcaacttcaa 83

                                                                       
Query: 563 ctagaccagcagtctttgccatgtcaaaccctacaaaaaat-gctgaatgcactcctgaa 621
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 84  ctagaccagcagtctttgccatgtcaaacc-tacaaaaaatagctgaatgcactcctgaa 142

                                                                       
Query: 622 gaagcattttccattttgggtgacaatattatttttgcaagtggaagtccattcaaagat 681
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gaagcattttccattttgggtgacaatattatttttgcaagtggaagtccattcaaagat 202

                                                                       
Query: 682 gtggatcttggaaatggtcatgtcggtcactgtaaccagggaaacaacatgtatctcttt 741
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtggatcttggaaatggtcatgtcggtcactgtaaccagggaaacaacatgtatctcttt 262

                                                                       
Query: 742 ccaggtattgggcttgggactctcctctctggttctagaatcatctctgatggcatgcta 801
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccaggtattgggcttgggactctcctctctggttctagaatcatctctgatggcatgcta 322

                                                                       
Query: 802 caggctgctgctgaatgcctagcagcatatatgacagaagaggaggttcttcaaggggtc 861
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caggctgctgctgaatgcctagcagcatatatgacagaagaggaggttcttcaaggggtc 382

                                                                       
Query: 862 atctacccttcaacatcgagaatccgggatataacaaagcaggtagctgcagctgtgatc 921
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atctacccttcgtcatcgagaatccgggatataacaaagcaggtagctgcagctgtgatc 442

                                                
Query: 922 aaggaggccatagaagaggatcttgcagaaggatacc 958
           |||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaggaggccatagaagaggatcttgcagaaggatacc 479