Jatropha Genome Database

JcCB0083701.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0083701.20 - phase: 2 /pseudo/partial
         (523 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11018                                                            359   4e-99

>KJC_c11018 
          Length = 426

 Score =  359 bits (181), Expect = 4e-99
 Identities = 205/209 (98%), Gaps = 3/209 (1%)
 Strand = Plus / Minus

                                                                       
Query: 40  aaagttgtgcttcattaatgttcctgaaattgtagaactggttggcagtgcagatgcaag 99
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaagttgtgcttcat-aatgttcctgaaattgtagaactggttggcagtgcagatgcaag 290

                                                                       
Query: 100 ccgagtcttacttctgaatgaacaggatgcaaaggaggtaagtaaaatcaattctgaaat 159
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 289 ccgagtcttacttctgaatgaacaggatgcaaaggagg-aagtaaa-tcaattctgaaat 232

                                                                       
Query: 160 caatttttacccaactcatgtcagctagcaaagacatgacaactaaagtaataacgaaat 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 caatttttacccaactcatgtcagctagcaaagacatgacaactaaagtaataacgaaat 172

                                        
Query: 220 tgaaaacccgattacatatggaaagccag 248
           |||||| ||||||||||||||||||||||
Sbjct: 171 tgaaaaaccgattacatatggaaagccag 143