Jatropha Genome Database

JcCB0078211.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0078211.10 - phase: 0 /partial
         (367 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09802                                                            591   e-169

>KJC_c09802 
          Length = 598

 Score =  591 bits (298), Expect = e-169
 Identities = 314/318 (98%), Gaps = 1/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 47  ttgccaaagattcctcatttttattcttgggaaggttgttggaagggtttggtgttggta 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgccaaagattcctcatttttattcttgggaaggttgttggaagggtttggtgttggta 539

                                                                       
Query: 107 taatctcgtacacggtaccagtatatatagctgagatatcgcctcagaacatgagaggaa 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 taatctcgtacacggtaccagtatatatagctgagatatcgcctcagaacatgagaggaa 479

                                                                       
Query: 167 gccttggatctgttaaccagctttcagttactcttggaataatgttggcttatctattag 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gccttggatctgttaaccagctttcagttactcttggaataatgttggcttatctattag 419

                                                                       
Query: 227 gactttttatgcactggaggctgcttgcagtgttaggaattttgccctgcacaatattaa 286
           ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||
Sbjct: 418 gactttttatgcactggaggctgcttgcagtgttaggaaattttgcctgcacaatattaa 359

                                                                       
Query: 287 tacctggcctctttttcattccagagtctcctcgatggctggccaaaatggggatgatgg 346
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 358 tacctggcctctttttcattccagagtctcctcgatggctggcc-aaatggggatgatgg 300

                             
Query: 347 aagattttgaagcctctt 364
           ||||||||||||||||||
Sbjct: 299 aagattttgaagcctctt 282