Jatropha Genome Database

JcCB0075571.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0075571.10 - phase: 0 /partial
         (2101 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06049                                                            799   0.0  
KJC_c07070                                                             68   9e-11

>KJC_c06049 
          Length = 474

 Score =  799 bits (403), Expect = 0.0
 Identities = 413/415 (99%), Gaps = 1/415 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1687 gtttacaagccctacgcagggccgtgccctccaactgcaggattcatagcgccagtttat 1746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474  gtttacaagccctacgcagggccgtgccctccaactgcaggattcatagcgccagtttat 415

                                                                        
Query: 1747 ggcaaatgtggccctatgaatttacctgcagggggtggggactttctgaatgcagcctgt 1806
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 414  ggcaaatgtggccctatgaatttacctgcagggg-tggggactttctgaatgcagcctgt 356

                                                                        
Query: 1807 ggtgttcaacaagggattggaatccttcccatgatccctcctttgggacagacatatttt 1866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355  ggtgttcaacaagggattggaatccttcccatgatccctcctttgggacagacatatttt 296

                                                                        
Query: 1867 ccaccgcatgccatgccggtcatgagtccttccatctcagtctcagcagtggagctggtg 1926
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295  ccaccgcatgccatgccggtcatgagtccttccatctcagtctcagcagtggagctggtg 236

                                                                        
Query: 1927 acaccattcattgcacccccgtcaaaggataatcaatcttcagctggggacattaaattt 1986
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235  acaccattcattgcacccccgtcaaaggataatcaatcttcagctggggacattaaattt 176

                                                                        
Query: 1987 gccttcccccatcaaagttcatgtaatatgttaagtcagatgagtcgtgtgatcttgtgt 2046
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175  gccttcccccatcaaagttcatgtaatatgttaagtcagatgagtcgtgtgatcttgtgt 116

                                                                   
Query: 2047 ggtgggaaatttcaagcatctaaggaaagtgaagtacaggaaagtacggcaagta 2101
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 115  ggtgggaaatttcaagcatctaaggaaagtgaggtacaggaaagtacggcaagta 61


>KJC_c07070 
          Length = 993

 Score = 67.9 bits (34), Expect = 9e-11
 Identities = 109/133 (81%), Gaps = 2/133 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  gatgaggaaaaaatcatgagtcctatatttcctaggcttcatgtgaatgatacagagaaa 75
           ||||| ||||| || ||| | ||||| || |||||||||||||||||||| || ||||||
Sbjct: 530 gatgatgaaaagataatggggcctatgttccctaggcttcatgtgaatgacacggagaaa 589

                                                                       
Query: 76  ggagggcccaaggcacctccaaggaacaaaatggctctgtatgaacaactcagtatccct 135
           |||||||| |  || ||||| ||  |||| ||||| || ||||| || || ||||| |||
Sbjct: 590 ggagggccaagagctcctcccag--acaagatggccctttatgagcagcttagtattcct 647

                        
Query: 136 tctcaaaggttta 148
           ||||| |||||||
Sbjct: 648 tctcagaggttta 660