Jatropha Genome Database

JcCB0073371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0073371.10 - phase: 2 /partial
         (841 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09642                                                            571   e-162

>KJC_c09642 
          Length = 308

 Score =  571 bits (288), Expect = e-162
 Identities = 302/304 (99%), Gaps = 2/304 (0%)
 Strand = Plus / Plus

                                                                       
Query: 519 accaaaggcacgcaaattggattcccatcccttggggaacttctatgggtggtccacttg 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   accaaaggcacgcaaattggattcccatcccttggggaacttctatgggtggtccacttg 60

                                                                       
Query: 579 gagaggttttgcacaataccaataacactgcctcggagtgcaagaattcatcggctctga 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gagaggttttgcacaataccaataacactgcctcggagtgcaagaattcatcggctctga 120

                                                                       
Query: 639 acctcttggctgagggatgggattgtagtcctcggttaggttcatctccaactggggtct 698
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acctcttggctgagggatgggattgtagtcctcggttaggttcatctccaactggggtct 180

                                                                       
Query: 699 tgcaaaaaactacattccattctctgtcaaatagcagtgcaggaagcagcccaagagcag 758
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcaaaaaact-cattccattctctgtcaaatagcagtgcaggaagcagcccaagagcag 239

                                                                       
Query: 759 agaacaacaagaatacagaaggggcaagcctgagtaatgaccttagcccaagtttagtgc 818
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agaacaac-agaatacagaaggggcaagcctgagtaatgaccttagcccaagtttagtgc 298

               
Query: 819 atcc 822
           ||||
Sbjct: 299 atcc 302