Jatropha Genome Database
- JcCB0071491.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0071491.10 - phase: 2 /partial
(1159 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00563 1814 0.0
KJC_c03341 147 7e-35
KJC_s13175 92 4e-18
KJC_c11373 72 3e-12
>KJC_c00563
Length = 1178
Score = 1814 bits (915), Expect = 0.0
Identities = 922/923 (99%), Gaps = 1/923 (0%)
Strand = Plus / Minus
Query: 104 gtttacactgacaatgaagatggcacacccc-ttggaagttcattgccccctgcgttccc 162
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1178 gtttacactgacaatgaagatggcacacccccttggaagttcattgccccctgcgttccc 1119
Query: 163 agggccatgcacactgcgaactgccttggcacgctatgcagacctcttgaactcacctcg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 agggccatgcacactgcgaactgccttggcacgctatgcagacctcttgaactcacctcg 1059
Query: 223 aaaggcggctttgattgctttggctgcccatgccagtgatcctagtgaggcagagagact 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 aaaggcggctttgattgctttggctgcccatgccagtgatcctagtgaggcagagagact 999
Query: 283 cagatttttagcatcaccacaagggaaggatgagtatgctcaatggattgttgctagcca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 cagatttttagcatcaccacaagggaaggatgagtatgctcaatggattgttgctagcca 939
Query: 343 gagaagtcttcttgaggtaatggctgagttcccttctgcaaaacctccccttggtgtatt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 gagaagtcttcttgaggtaatggctgagttcccttctgcaaaacctccccttggtgtatt 879
Query: 403 ttttgcagcagtagctcctcgtctacagcctcgctactattcgatctcatcctcccccag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttttgcagcagtagctcctcgtctacagcctcgctactattcgatctcatcctcccccag 819
Query: 463 gtttgctcccagtagagtgcatgtgacctgtgctttagtttatggtccaacaccgactgg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gtttgctcccagtagagtgcatgtgacctgtgctttagtttatggtccaacaccgactgg 759
Query: 523 tagaatccacaaaggggtgtgctcaacctggatgaagaatgcagttcctctggagagaag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tagaatccacaaaggggtgtgctcaacctggatgaagaatgcagttcctctggagagaag 699
Query: 583 cagtgactgtagctgggctcccattttcattcggacatctaatttcaagttaccatctga 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cagtgactgtagctgggctcccattttcattcggacatctaatttcaagttaccatctga 639
Query: 643 tccatcagttccaattatcatggtgggacctggtactggattggcaccttttagaggatt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tccatcagttccaattatcatggtgggacctggtactggattggcaccttttagaggatt 579
Query: 703 tctacaggaaagaatggccttgaagcaggagggcgctcaacttggtcctgctctgctctt 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tctacaggaaagaatggccttgaagcaggagggcgctcaacttggtcctgctctgctctt 519
Query: 763 ctttggatgtagaaatcgtcgaatggatttcatatatgaggatgaactcaataatttcgt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctttggatgtagaaatcgtcgaatggatttcatatatgaggatgaactcaataatttcgt 459
Query: 823 agaacaaggtgtgatatctgagttgattgttgcattctcaagagaggggccacaaaagga 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agaacaaggtgtgatatctgagttgattgttgcattctcaagagaggggccacaaaagga 399
Query: 883 gtatgttcaacataagatggtgcagaaagcagcacaaatatgggccataatttctcaggg 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtatgttcaacataagatggtgcagaaagcagcacaaatatgggccataatttctcaggg 339
Query: 943 cggatacctttatgtctgtggtgatgcaaagggtatggccagagacgtccaccgtacttt 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cggatacctttatgtctgtggtgatgcaaagggtatggccagagacgtccaccgtacttt 279
Query: 1003 gcataatattgttcaggagcagg 1025
|||||||||||||||||||||||
Sbjct: 278 gcataatattgttcaggagcagg 256
>KJC_c03341
Length = 480
Score = 147 bits (74), Expect = 7e-35
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 1 gtatgaaactggtgaccatgtgggtgtttattctgagaattttgacgaaactgttgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 gtatgaaactggtgaccatgtgggtgtttattctgagaattttgacgaaactgttgaaga 16
Query: 61 agcagcaaaattgt 74
||||||||||||||
Sbjct: 15 agcagcaaaattgt 2
>KJC_s13175
Length = 50
Score = 91.7 bits (46), Expect = 4e-18
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 184 tgccttggcacgctatgcagacctcttgaactcacctcgaaaggcg 229
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 tgccttggcacgctatgcagacctcttgaactcacctcgaaaggcg 1
>KJC_c11373
Length = 711
Score = 71.9 bits (36), Expect = 3e-12
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 530 cacaaaggggtgtgctcaacctggatgaagaatgcagttcctctggagagaagcagtgac 589
|||||||| ||||||||||| |||||||||||| | || ||| |||||| |||||||||
Sbjct: 594 cacaaaggagtgtgctcaacttggatgaagaattctgtgcctttggagaaaagcagtgaa 535
Query: 590 tgtagctgggctcccatttt 609
|| || ||||| ||||||||
Sbjct: 534 tgcagttgggcacccatttt 515