Jatropha Genome Database

JcCB0069321.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0069321.10 + phase: 2 /pseudo/partial
         (1489 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05222                                                            946   0.0  

>KJC_c05222 
          Length = 524

 Score =  946 bits (477), Expect = 0.0
 Identities = 519/525 (98%), Gaps = 6/525 (1%)
 Strand = Plus / Minus

                                                                       
Query: 344 gagcactgtgatgtcata-tcacaagcttacaa-gacactttggaaagatttagaaatt- 400
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 524 gagcactgtgatgtcataatcacaagcttacaaagacactttggaaagatttagaaatta 465

                                                                       
Query: 401 gcttatgacaaatttattcggacaactgatcccaagcatgaagcaattgtcaaggaattt 460
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 464 gcttatgacaaatttattcg-acaactgatcccaagcatgaagcaattgtcaagga-ttt 407

                                                                       
Query: 461 tattctagagttcttgccaatggggatatttatcgcgctgactatgagggactatactgt 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tattctagagttcttgccaatggggatatttatcgcgctgactatgagggactatactgt 347

                                                                       
Query: 521 gtcaactgtgaggagtataaggatgagaaggatctgcttgataacaagtgttgtcccgtg 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtcaactgtgaggagtataaggatgagaaggatctgcttgataacaagtgttgtcccgtg 287

                                                                       
Query: 581 cacctaaagccatgcattcagcggaaagaggataattatttctttgccttgtcaaagtac 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cacctaaagccatgcattcagcggaaagaggataattatttctttgccttgtcaaagtac 227

                                                                       
Query: 641 caaaa-gctattagaagaaacattgacagagtgtccaaattttgtgcagccttcattccg 699
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 caaaaagctattagaagaaacattgacagagtgtccaaattttgtgcagccttcattccg 167

                                                                       
Query: 700 tttgaatgaggtgcaaagctggattagaagtggcttgaaagatttttcaatttcccgagc 759
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tttgaatgaggtgcaaagctggattagaagtggcttgaaagatttttcaatttcccgagc 107

                                                                       
Query: 760 atcagtggattggggcattccagttcctaatgacaataagcagaccatatatgtttggtt 819
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atcagtggattggggcattccagttcctaatgacaataagcagaccatatatgtttggtt 47

                                                        
Query: 820 cgatgcattactaggctacatatcagctctatcggaggacaacaa 864
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  cgatgcattactaggctacatatcagctctatcggaggacaacaa 2