Jatropha Genome Database

JcCB0064981.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0064981.30 + phase: 0 
         (876 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06383                                                             60   9e-09

>KJC_c06383 
          Length = 609

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 235 tttgaaggggaggtttatgttttccctgctgttactcctgagaaggtccaagcagtgctc 294
           ||||||||||| || |||||||| ||| ||||||| ||||| ||||| ||||| ||| | 
Sbjct: 89  tttgaaggggaagtgtatgtttttccttctgttacacctgaaaaggtgcaagctgtgttg 148

                         
Query: 295 ttgcttctgggagg 308
           || |||||||||||
Sbjct: 149 ttacttctgggagg 162



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 117/146 (80%), Gaps = 1/146 (0%)
 Strand = Plus / Plus

                                                                       
Query: 367 tcaaatctttcaagaagaatagcctcccttgttagatttcgtgagaaacggaaggagaga 426
           ||||| |||||||||||||| |||||||| ||||| || ||| | || ||||| || |||
Sbjct: 254 tcaaaactttcaagaagaattgcctccctggttaggttccgtcaaaagcggaaagataga 313

                                                                       
Query: 427 tgtttcgataagaaaataagatacactgtccgaaaagaggttgcacagaggatgcaccgc 486
           || || || ||| ||||  |||||| |  ||| ||||| |||||  |||| ||||| || 
Sbjct: 314 tgctttgaaaag-aaattcgatacaattgccggaaagaagttgccaagagaatgcatcgt 372

                                     
Query: 487 aaaaatgggcaatttgcatccttgaa 512
           || ||||| ||||||||||| |||||
Sbjct: 373 aagaatggacaatttgcatcgttgaa 398



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 66/78 (84%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                       
Query: 628 actcctgcaatgcg-tcgtgggccagctggaccaaggacattatgtaatgcttgtggcct 686
           ||||| |||||||| ||| ||||||||||| ||||| |   | || ||||||||||||||
Sbjct: 499 actccagcaatgcggtcgagggccagctggtccaagaagtctctgcaatgcttgtggcct 558

                             
Query: 687 aatgtgggcgaataaggg 704
            |||||||| ||||||||
Sbjct: 559 tatgtgggcaaataaggg 576