Jatropha Genome Database

JcCB0061481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0061481.10 - phase: 2 /partial
         (352 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05208                                                            650   0.0  

>KJC_c05208 
          Length = 1256

 Score =  650 bits (328), Expect = 0.0
 Identities = 335/336 (99%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgaattgattcgccaaggtttgcgggacttggctgtttctcagtctactcttccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctttgaattgattcgccaaggtttgcgggacttggctgtttctcagtctactcttccaaa 438

                                                                       
Query: 61  ggcagatcctaggattgcaaaacttgcagcagatggtgctgatgcacctctagaggagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggcagatcctaggattgcaaaacttgcagcagatggtgctgatgcacctctagaggagct 378

                                                                       
Query: 121 tcaagaaatcataagtgaagttgcaaccaatattcatggttcttatgttctgaagtcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcaagaaatcataagtgaagttgcaaccaatattcatggttcttatgttctgaagtcatc 318

                                                                       
Query: 181 tccagatcacccgcaatatgatgtgttgaggaaagttgtaattgatctcctattggcgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tccagatcacccgcaatatgatgtgttgaggaaagttgtaattgatctcctattggcgag 258

                                                                       
Query: 241 gggtcccaatgcaaagcttaagaagtctgaagtctatgaagcagccaagc-ttgttttga 299
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 257 gggtcccaatgcaaagcttaagaagtctgaagtctatgaagcagccaagctttgttttga 198

                                               
Query: 300 agagggatattaacacaactgaatataccaaggtca 335
           ||||||||||||||||||||||||||||||||||||
Sbjct: 197 agagggatattaacacaactgaatataccaaggtca 162