Jatropha Genome Database

JcCB0061321.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0061321.10 + phase: 0 /pseudo/partial
         (300 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01919                                                            176   2e-44
KJC_c04932                                                             86   5e-17

>KJC_c01919 
          Length = 615

 Score =  176 bits (89), Expect = 2e-44
 Identities = 209/244 (85%), Gaps = 10/244 (4%)
 Strand = Plus / Plus

                                                                       
Query: 55  tcttcactggcaggcagtttgaagatggccgaaccttggcggattacaatatccataaag 114
           ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 149 tcttcgctggcaagcagcttgaagatggccgaaccttggcggattacaatatccagaaag 208

                                                                       
Query: 115 aatc---tctg--tcttgttttgagtcttagggaagggattgtaaatcatt-tatcatgg 168
           ||||   |||   |||||||||||| ||||||| ||||||  || | | || | ||||||
Sbjct: 209 aatcgactcttcatcttgttttgaggcttaggggagggatcatagaaccttctctcatgg 268

                                                                       
Query: 169 ctttggctcgcaaatataatcaaagataagatgatttgtcgcaagtgct---ctcgtgta 225
           | |||||||||||||| |||||| |||||||||||||| ||||||||||   ||||| | 
Sbjct: 269 cattggctcgcaaatacaatcaa-gataagatgatttgccgcaagtgctatgctcgtctg 327

                                                                       
Query: 226 catccatgggctgtaaattgctggaagaagaagtgcggccatagcagttagtggagatct 285
           |||||| |||||||||||||| |||||||||||||||| ||||||| | ||| |||| ||
Sbjct: 328 catccaagggctgtaaattgccggaagaagaagtgcggtcatagcaatcagttgagacct 387

               
Query: 286 aaga 289
           ||||
Sbjct: 388 aaga 391


>KJC_c04932 
          Length = 446

 Score = 85.7 bits (43), Expect = 5e-17
 Identities = 173/213 (81%), Gaps = 10/213 (4%)
 Strand = Plus / Plus

                                                                       
Query: 68  gcagtttgaagatggccgaaccttggcggattacaatatccataaagaat-----ctctg 122
           |||| |||||||||||||||| |||||||||||||||||||| |||||||     |||  
Sbjct: 157 gcagcttgaagatggccgaactttggcggattacaatatccagaaagaatcaaccctcca 216

                                                                       
Query: 123 tcttgttttgagtcttagggaagggattgtaaatcatt-tatcatggctttggctcgcaa 181
           |||||| ||||| ||||||| ||| ||| |  | | || | | |||||||||||||||||
Sbjct: 217 tcttgtgttgaggcttaggggaggtattattgagccttctcttatggctttggctcgcaa 276

                                                                       
Query: 182 atataatcaaagataagatgatttgtcgcaagtgct---ctcgtgtacatccatgggctg 238
           |||||||| | || ||||||||||| |||||||| |   ||||| | |||||  ||||||
Sbjct: 277 atataatc-aggacaagatgatttgccgcaagtgttatgctcgtctgcatcctagggctg 335

                                            
Query: 239 taaattgctggaagaagaagtgcggccatagca 271
           | || ||| |||||||||| || || |||||||
Sbjct: 336 tgaactgccggaagaagaaatgtgggcatagca 368