Jatropha Genome Database

JcCB0060791.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0060791.20 - phase: 2 /pseudo/partial
         (283 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09667                                                            460   e-130

>KJC_c09667 
          Length = 461

 Score =  460 bits (232), Expect = e-130
 Identities = 239/240 (99%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 44  gatgcagaagttccatggcatctgattgccatagcaatattttttaccttgatcaaattg 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gatgcagaagttccatggcatctgattgccatagcaatattttttaccttgatcaaattg 240

                                                                       
Query: 104 ccggggccatgttatccatactggggacgcatttttgttccacacattgctaatggggtg 163
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ccggg-ccatgttatccatactggggacgcatttttgttccacacattgctaatggggtg 181

                                                                       
Query: 164 ctatggagaactctgtggtctgcatttctgtggtttagaagacccagaaagggatcagga 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctatggagaactctgtggtctgcatttctgtggtttagaagacccagaaagggatcagga 121

                                                                       
Query: 224 gcagtgttgcaacaaaattcagcagatagcagtaattctgaaacaaatactctaatttca 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gcagtgttgcaacaaaattcagcagatagcagtaattctgaaacaaatactctaatttca 61