Jatropha Genome Database
- JcCB0060211.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0060211.10 + phase: 0 /partial
(987 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01596 157 6e-38
KJC_c09747 72 3e-12
KJC_c05100 72 3e-12
>KJC_c01596
Length = 1569
Score = 157 bits (79), Expect = 6e-38
Identities = 404/511 (79%), Gaps = 1/511 (0%)
Strand = Plus / Plus
Query: 220 acttaccgatactatgatcctgcaactcatgggctggattttcaaggattattggaggat 279
|||||||| || |||||||| |||| | ||| ||| | || ||||| || ||||| |||
Sbjct: 639 acttaccggtattatgatcccacaacacgtggactgaacttccaaggcttgttggaagat 698
Query: 280 ctcagttctgcaccatcaggagccattgtacttctccaagcatgtgggcacaaccctacg 339
|| | ||||| ||||||||||| ||||||||||| || ||||||| || ||||| ||
Sbjct: 699 cttgggtctgctccatcaggagctattgtacttcttcatgcatgtgcccataaccccaca 758
Query: 340 ggtgttgatccaactcttgagcaatgggagcatatcaggcagctaatgaggttaaaagga 399
||||||||||||||| | |||| ||||| || || |||||||| ||||| | ||||||
Sbjct: 759 ggtgttgatccaactttgcagcagtgggatcaaataaggcagctgatgagatcaaaaggg 818
Query: 400 ctgctacctttctttgattgtgcttatcagggctttgtaagtggaaatttggatatggat 459
|| | ||||||||||| |||| |||||||| |||| |||||||| |||| |||
Sbjct: 819 ttgatgcctttctttgacagtgcctatcagggttttgcaagtggaagcctggactctgat 878
Query: 460 gctcaatcaattcgagtgtttgtggcagatggtggtgaatgccttgtagctcaatcttat 519
|| ||||| |||| ||||||| || |||||||||||| |||||||||||| ||||
Sbjct: 879 gcacaatctgttcgcatgtttgttgctgatggtggtgaacttcttgtagctcaaagttat 938
Query: 520 tcaaagatcatgggaatctatgcggaccgcgttg-gtgcacttagcattgtgtgcaagac 578
|||| | |||||| |||| | ||| || |||| |||| | |||||||| |||| |||
Sbjct: 939 gcaaaaaacatggggctctacggggaacgtgttgtgtgccttgagcattgtttgcaggac 998
Query: 579 agcagatgtggcgagccgggttaatagccagctgaaacttgtgatcagaccctcttattc 638
|| ||||| |||||| ||||| | |||||| ||||||||||||| |||||| |||||
Sbjct: 999 tgctgatgttgcgagcagggttgagagccagttgaaacttgtgattagacccatgtattc 1058
Query: 639 aaacccgcccattcatggggcagctgttgtggctaccatcctaaatgacagggaaatggt 698
|||||| ||||||||||| ||| || | |||||| ||||||||| || ||| | ||
Sbjct: 1059 aaacccacccattcatggagcatctatagtggctttcatcctaaaagataggaatttgta 1118
Query: 699 cactgaatggaccgttgagttgaaggcaatg 729
|| ||| |||||| ||||| |||||||||||
Sbjct: 1119 caatgagtggaccattgagctgaaggcaatg 1149
>KJC_c09747
Length = 116
Score = 71.9 bits (36), Expect = 3e-12
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 562 agcattgtgtgcaagacagcagatgtggcgagccgggttaatagccagctgaaacttgtg 621
|||||||| |||| ||| || ||||| |||||| ||||| | |||||| |||||||||||
Sbjct: 95 agcattgtttgcaggactgctgatgttgcgagcagggttgagagccagttgaaacttgtg 36
Query: 622 atcagaccctcttattcaaacccgcccattca 653
|| |||||| ||||||||||| ||||||||
Sbjct: 35 attagacccatgtattcaaacccacccattca 4
>KJC_c05100
Length = 566
Score = 71.9 bits (36), Expect = 3e-12
Identities = 136/168 (80%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 217 aagacttaccgatactatgatcctgcaactcatgggctggattttcaaggattattggag 276
||||| ||||| ||||||||||| ||||| | |||||||||||| ||||| || | |||
Sbjct: 356 aagacgtaccggtactatgatccagcaacacgtgggctggatttccaaggcttgctagag 415
Query: 277 gatctcagttctgcaccatcaggagccattgtacttctccaagcatgtgggcacaaccct 336
||||| | ||||||||| ||||| | | || |||||||| ||||||| || |||||
Sbjct: 416 gatctgggatctgcaccaacaggatctgtagtgcttctccatgcatgtgcacataaccca 475
Query: 337 acgggtg-ttgatccaactcttgagcaatgggagcatatcaggcagct 383
|| || | |||| ||||| |||||||| |||||||| ||||| |||||
Sbjct: 476 actggcgtttgacccaacccttgagcagtgggagcagatcagacagct 523