Jatropha Genome Database

JcCB0059341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0059341.10 + phase: 0 /partial
         (285 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03972                                                            549   e-156

>KJC_c03972 
          Length = 473

 Score =  549 bits (277), Expect = e-156
 Identities = 284/285 (99%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccgccgcctccgcctccaccttatgaaggttatccaccaccacagccaccgtctggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ctccgccgcctccgcctccaccttatgaaggttatccaccaccacagccaccgtctggat 151

                                                                       
Query: 61  atcctggatatccaccacccaccaggaccgcgacagccatacgaaggttatcaaggctat 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 atcctggatatccaccacc-accaggaccgcgacagccatacgaaggttatcaaggctat 210

                                                                       
Query: 121 ttcgctgaaggatatccaccacctccaccgcagcccggtcagccgcagtatcagcattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ttcgctgaaggatatccaccacctccaccgcagcccggtcagccgcagtatcagcattat 270

                                                                       
Query: 181 cactgcgagcatcaccattatcaagataatgatggctgtacctcatttttgaggggatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cactgcgagcatcaccattatcaagataatgatggctgtacctcatttttgaggggatgt 330

                                                        
Query: 241 ttggctgcactttgttgctgttgtgtgctggaggaatgctgcttc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttggctgcactttgttgctgttgtgtgctggaggaatgctgcttc 375