Jatropha Genome Database

JcCB0056061.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0056061.10 - phase: 0 
         (216 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_s15279                                                            198   4e-51
KJC_c00209                                                            198   4e-51
KJC_c12907                                                             92   6e-19
KJC_c04074                                                             78   9e-15
KJC_c11097                                                             60   2e-09

>KJC_s15279 
          Length = 453

 Score =  198 bits (100), Expect = 4e-51
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtgcttctaggttcattaaatgcgtcacagttggtgatggtgctgttggcaagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  atgagtgcttctaggttcattaaatgcgtcacagttggtgatggtgctgttggcaagact 134

                                                   
Query: 61  tgcatgctcatctcctacaccagcaacacttttcctactg 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgcatgctcatctcctacaccagcaacacttttcctactg 174


>KJC_c00209 
          Length = 1134

 Score =  198 bits (100), Expect = 4e-51
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtgcttctaggttcattaaatgcgtcacagttggtgatggtgctgttggcaagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 atgagtgcttctaggttcattaaatgcgtcacagttggtgatggtgctgttggcaagact 222

                                                   
Query: 61  tgcatgctcatctcctacaccagcaacacttttcctactg 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tgcatgctcatctcctacaccagcaacacttttcctactg 262


>KJC_c12907 
          Length = 662

 Score = 91.7 bits (46), Expect = 6e-19
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagtgcttctaggttcattaaatgcgtcacagttggtgatggtgctgttggcaagact 60
           |||||||| |||||||||||||| |||||||| || || |||||||| || || ||||| 
Sbjct: 211 atgagtgcctctaggttcattaagtgcgtcaccgtcggcgatggtgccgtcggaaagacc 152

                                                 
Query: 61  tgcatgctcatctcctacaccagcaacacttttcctac 98
           |||||||| || ||||||||||||||||| || |||||
Sbjct: 151 tgcatgcttatttcctacaccagcaacaccttccctac 114


>KJC_c04074 
          Length = 506

 Score = 77.8 bits (39), Expect = 9e-15
 Identities = 85/99 (85%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtgcttctaggttcattaaatgcgtcacagttggtgatggtgctgttggcaagact 60
           |||||||| |||||||||||||| |||||||| || || |||||||| || || ||||| 
Sbjct: 343 atgagtgcctctaggttcattaagtgcgtcaccgtcggcgatggtgccgtcggaaagacc 402

                                                  
Query: 61  tgcatgctcatct-cctacaccagcaacacttttcctac 98
           |||||||| || | |||||||||||||||| || |||||
Sbjct: 403 tgcatgcttatttccctacaccagcaacaccttccctac 441


>KJC_c11097 
          Length = 519

 Score = 60.0 bits (30), Expect = 2e-09
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtgcttctaggttcattaaatgcgtcacagttggtgatggtgctgttggcaagact 60
           ||||| ||||| ||||| || || |||||||| || ||||||||||| ||||| || |||
Sbjct: 210 atgagcgcttccaggtttatcaagtgcgtcacggtcggtgatggtgccgttggtaaaact 269

                                                 
Query: 61  tgcatgctcatctcctacaccagcaacacttttcctac 98
           ||  |  | || || |||||||||||||||||||||||
Sbjct: 270 tgtctcttgatttcttacaccagcaacacttttcctac 307