Jatropha Genome Database
- JcCB0055221.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0055221.20 + phase: 0 /pseudo
(870 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c07371 745 0.0
KJC_c10923 547 e-155
>KJC_c07371
Length = 535
Score = 745 bits (376), Expect = 0.0
Identities = 413/419 (98%), Gaps = 6/419 (1%)
Strand = Plus / Minus
Query: 453 gccacactgggtc-agaaacttgctattatacatcagttactgattttctagaaaataaa 511
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 535 gccacactgggtctagaaacttgctattatacatcagttactgattt-ctagaaa-taaa 478
Query: 512 caggtggagggtaataggttggcatcaaccactttgtattacattagagtcaacaatttt 571
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 477 caggtggagggtaataggttggcatcaaccactttgtatt-cattagagtcaacaatt-- 421
Query: 572 cccagcgtaaagcagaattagtagtgccagaagatggaaaaccctcttggactaagcgat 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cccagcgtaaagcagaattagtagtgccagaagatggaaaaccctcttggactaagcgat 361
Query: 632 tactactcgatcgcaacttattgtgttcaaaaatccgggaagaggcagatgaattatgcc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tactactcgatcgcaacttattgtgttcaaaaatccgggaagaggcagatgaattatgcc 301
Query: 692 gaacaatagaagaaaatgagcatagtgcacgaactgcttcagagatgggagatgtgctat 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gaacaatagaagaaaatgagcatagtgcacgaactgcttcagagatgggagatgtgctat 241
Query: 752 accataccatggttctcttggctcttaaagacgtaaaaatagaagatgtgctagatgtcc 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 accataccatggttctcttggctcttaaagacgtaaaaatagaagatgtgctagatgtcc 181
Query: 812 ttcgacgtagattttctcaatccggtattgaggaaaagaagagtcgagggcaacaaaac 870
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttcgacgtagattttctcaatccggtattgaggaaaagaagagtcgagggcaacaaaac 122
>KJC_c10923
Length = 388
Score = 547 bits (276), Expect = e-155
Identities = 290/292 (99%), Gaps = 2/292 (0%)
Strand = Plus / Plus
Query: 1 atggcggcttcatctttgcactgtattcaatctctaaggttttcgtcaagaagctgtgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atggcggcttcatctttgcactgtattcaatctctaaggttttcgtcaagaagctgtgcc 157
Query: 61 ttctttcctcatattggtttcagaggagacgatgacaataagagaaagaactctcgttta 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttctt-cctcatattggtttcagaggagacgatgacaataagagaaagaactctcgttta 216
Query: 121 attttagcttctgtaaagaaatctgataaagatctctctgttgaatctaaggttgaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 attttagcttctgtaaagaaatctgataaagatctctctgttgaatctaaggttgaaaca 276
Query: 181 ttgttagacagtgtaaaatgggatgacaaaggtttggcagtggctattgctcaaaatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgttagacagtgtaaaatgggatgacaaaggtttggcagtggctattgctcaaaatatt 336
Query: 241 gacacaggagccatattaatgcaagg-ctttgtgaacagggatgcactagct 291
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 337 gacacaggagccatattaatgcaaggtctttgtgaacagggatgcactagct 388