Jatropha Genome Database

JcCB0054381.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0054381.10 + phase: 0 
         (813 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02434                                                            238   2e-62
KJC_c06912                                                             64   6e-10

>KJC_c02434 
          Length = 1108

 Score =  238 bits (120), Expect = 2e-62
 Identities = 332/400 (83%), Gaps = 2/400 (0%)
 Strand = Plus / Minus

                                                                        
Query: 195  aacttatggaccggtaatgggtattaaactcggtgaaattccctttcttgttgtttcctc 254
            |||||| ||||| ||||||||| || |||| ||  || |||| || ||||| || |||||
Sbjct: 1071 aacttacggacctgtaatgggtgttcaacttgggcaagttcctttccttgtcgtgtcctc 1012

                                                                        
Query: 255  gccggaagcagccaaagaagtgatgaaaatacaagatcccatctttgcagaacgagcgct 314
            ||||||| |||| |||||||| |||||||||||||||||| | |||||||||||| ||||
Sbjct: 1011 gccggaaacagctaaagaagtaatgaaaatacaagatcccgtttttgcagaacgaccgct 952

                                                                        
Query: 315  tgtctttgcaaatgatgtgttgaactataaccgtaacggcatggtttttgggtcatacgg 374
            |||| |||||   ||  |  ||   |||||||| || | ||| ||||||||||| |||||
Sbjct: 951  tgtccttgcaggagaaatagtgctttataaccgaaatgacatcgtttttgggtcgtacgg 892

                                                                        
Query: 375  atatcaatggaggcaattgagaaaattttgtacgttggcattactgagcgcaaaacgagt 434
            | |||| ||||||||| ||||||||||||| ||||||| |||||| ||| ||||||||||
Sbjct: 891  agatcagtggaggcaaatgagaaaattttgcacgttggaattacttagcacaaaacgagt 832

                                                                        
Query: 435  acagtcgtttcaatcagtaagagaagaagaaatggctgattttgt-aaactttctgcgtt 493
            ||||||||| | | | || |||||||||||| | ||   |||||| |||  || ||||| 
Sbjct: 831  acagtcgttccgacccgtgagagaagaagaagttgcatcttttgtaaaaacttatgcgta 772

                                                                        
Query: 494  ccaaagaaggaagttctgttaatcttactcatactatatttgcttttacaaattctataa 553
            | ||  |||||| | ||||||||||||||||| || || ||||||| |||||||||||| 
Sbjct: 771  caaagaaaggaactcctgttaatcttactcatgcttta-ttgctttaacaaattctatag 713

                                                    
Query: 554  ttgcaagaaatgctgttggtcataaaaccaaaaatcaaga 593
            ||||||||||||||||||||||||||| |||||| |||||
Sbjct: 712  ttgcaagaaatgctgttggtcataaaagcaaaaaccaaga 673


>KJC_c06912 
          Length = 550

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 39/40 (97%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                   
Query: 764 catccttaatttctatatcttatctcaagattagatgtaa 803
           ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 480 catccttaatt-ctatatcttatctcaagattagatgtaa 518